Gene : MSI1 A. thaliana TAIR10
Primary Identifier:  ? AT5G58230 Defline:  (1 of 5) K10752 - histone-binding protein RBBP4 (RBBP4, HAT2, CAF1, MIS16)
Genomic Order:  5312 Name:  ? AT5G58230
Secondary Identifier:  ? PAC:19665732
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0 Pathways

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G58230 0.5kb upstream 0.5kb upstream 2734 true Chr5: 23555512-23558245 Arabidopsis thaliana
AT5G58230 0.5kb upstream 0.5kb upstream 500 false Chr5: 23555512-23556011 Arabidopsis thaliana
AT5G58230 0.5kb downstream 0.5kb downstream 2734 true Chr5: 23556012-23558745 Arabidopsis thaliana
AT5G58230 0.5kb downstream 0.5kb downstream 500 false Chr5: 23558246-23558745 Arabidopsis thaliana
AT5G58230 1.0kb upstream 1.0kb upstream 3234 true Chr5: 23555012-23558245 Arabidopsis thaliana
AT5G58230 1.0kb upstream 1.0kb upstream 1000 false Chr5: 23555012-23556011 Arabidopsis thaliana
AT5G58230 1.0kb downstream 1.0kb downstream 3234 true Chr5: 23556012-23559245 Arabidopsis thaliana
AT5G58230 1.0kb downstream 1.0kb downstream 1000 false Chr5: 23558246-23559245 Arabidopsis thaliana
AT5G58230 2.0kb upstream 2.0kb upstream 4234 true Chr5: 23554012-23558245 Arabidopsis thaliana
AT5G58230 2.0kb upstream 2.0kb upstream 2000 false Chr5: 23554012-23556011 Arabidopsis thaliana
AT5G58230 2.0kb downstream 2.0kb downstream 4234 true Chr5: 23556012-23560245 Arabidopsis thaliana
AT5G58230 2.0kb downstream 2.0kb downstream 2000 false Chr5: 23558246-23560245 Arabidopsis thaliana
AT5G58230 5.0kb upstream 5.0kb upstream 7234 true Chr5: 23551012-23558245 Arabidopsis thaliana
AT5G58230 5.0kb upstream 5.0kb upstream 5000 false Chr5: 23551012-23556011 Arabidopsis thaliana
AT5G58230 5.0kb downstream 5.0kb downstream 7234 true Chr5: 23556012-23563245 Arabidopsis thaliana
AT5G58230 5.0kb downstream 5.0kb downstream 5000 false Chr5: 23558246-23563245 Arabidopsis thaliana
AT5G58230 10.0kb upstream 10.0kb upstream 12234 true Chr5: 23546012-23558245 Arabidopsis thaliana
AT5G58230 10.0kb upstream 10.0kb upstream 10000 false Chr5: 23546012-23556011 Arabidopsis thaliana
AT5G58230 10.0kb downstream 10.0kb downstream 12234 true Chr5: 23556012-23568245 Arabidopsis thaliana
AT5G58230 10.0kb downstream 10.0kb downstream 10000 false Chr5: 23558246-23568245 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360238 5261 Brassicaceae View MSA
123833071 5264 Brassicales-Malvales View MSA
124336573 5266 SBM View MSA
124249627 5268 Malvidae View MSA
124068970 5270 Rosid View MSA
123736700 5271 Pentapetalae View MSA
122793488 5272 Eudicot View MSA
122044836 5273 Angiosperm View MSA
121350438 5274 Embryophyte View MSA
123428491 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.988        
cufflinks 21.794        
cufflinks 14.252       Low
cufflinks 24.492        
cufflinks 14.668       Low
cufflinks 25.989       High

0 Strain