Gene : AT5G61310 A. thaliana TAIR10
Defline:  (1 of 2) PTHR34372:SF2 - CYTOCHROME C OXIDASE SUBUNIT 5C-2-RELATED Genomic Order:  5634
Name:  ? AT5G61310 Secondary Identifier:  ? PAC:19669648
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G61310 0.5kb upstream 0.5kb upstream 2018 true Chr5: 24653352-24655369 Arabidopsis thaliana
AT5G61310 0.5kb upstream 0.5kb upstream 500 false Chr5: 24654870-24655369 Arabidopsis thaliana
AT5G61310 0.5kb downstream 0.5kb downstream 2018 true Chr5: 24652852-24654869 Arabidopsis thaliana
AT5G61310 0.5kb downstream 0.5kb downstream 500 false Chr5: 24652852-24653351 Arabidopsis thaliana
AT5G61310 1.0kb upstream 1.0kb upstream 2518 true Chr5: 24653352-24655869 Arabidopsis thaliana
AT5G61310 1.0kb upstream 1.0kb upstream 1000 false Chr5: 24654870-24655869 Arabidopsis thaliana
AT5G61310 1.0kb downstream 1.0kb downstream 2518 true Chr5: 24652352-24654869 Arabidopsis thaliana
AT5G61310 1.0kb downstream 1.0kb downstream 1000 false Chr5: 24652352-24653351 Arabidopsis thaliana
AT5G61310 2.0kb upstream 2.0kb upstream 3518 true Chr5: 24653352-24656869 Arabidopsis thaliana
AT5G61310 2.0kb upstream 2.0kb upstream 2000 false Chr5: 24654870-24656869 Arabidopsis thaliana
AT5G61310 2.0kb downstream 2.0kb downstream 3518 true Chr5: 24651352-24654869 Arabidopsis thaliana
AT5G61310 2.0kb downstream 2.0kb downstream 2000 false Chr5: 24651352-24653351 Arabidopsis thaliana
AT5G61310 5.0kb upstream 5.0kb upstream 6518 true Chr5: 24653352-24659869 Arabidopsis thaliana
AT5G61310 5.0kb upstream 5.0kb upstream 5000 false Chr5: 24654870-24659869 Arabidopsis thaliana
AT5G61310 5.0kb downstream 5.0kb downstream 6518 true Chr5: 24648352-24654869 Arabidopsis thaliana
AT5G61310 5.0kb downstream 5.0kb downstream 5000 false Chr5: 24648352-24653351 Arabidopsis thaliana
AT5G61310 10.0kb upstream 10.0kb upstream 11518 true Chr5: 24653352-24664869 Arabidopsis thaliana
AT5G61310 10.0kb upstream 10.0kb upstream 10000 false Chr5: 24654870-24664869 Arabidopsis thaliana
AT5G61310 10.0kb downstream 10.0kb downstream 11518 true Chr5: 24643352-24654869 Arabidopsis thaliana
AT5G61310 10.0kb downstream 10.0kb downstream 10000 false Chr5: 24643352-24653351 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377188 5261 Brassicaceae View MSA
123840897 5264 Brassicales-Malvales View MSA
124348349 5266 SBM View MSA
124244275 5268 Malvidae View MSA
124062705 5270 Rosid View MSA
123751870 5271 Pentapetalae View MSA
122793093 5272 Eudicot View MSA
122049821 5273 Angiosperm View MSA
121349750 5274 Embryophyte View MSA
123428539 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.643        
cufflinks 2.313       High
cufflinks 1.508        
cufflinks 2.123        
cufflinks 1.15       Low
cufflinks 2.112        

0 Strain