Gene : SNAP33 A. thaliana TAIR10
Primary Identifier:  ? AT5G61210 Defline:  (1 of 3) PTHR19305//PTHR19305:SF7 - SYNAPTOSOMAL ASSOCIATED PROTEIN // SNAP25 HOMOLOGOUS PROTEIN SNAP30-RELATED
Genomic Order:  5623 Name:  ? AT5G61210
Secondary Identifier:  ? PAC:19666067
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0 Pathways

Genomics

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Expression

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G61210 0.5kb upstream 0.5kb upstream 2833 true Chr5: 24622799-24625631 Arabidopsis thaliana
AT5G61210 0.5kb upstream 0.5kb upstream 500 false Chr5: 24622799-24623298 Arabidopsis thaliana
AT5G61210 0.5kb downstream 0.5kb downstream 2833 true Chr5: 24623299-24626131 Arabidopsis thaliana
AT5G61210 0.5kb downstream 0.5kb downstream 500 false Chr5: 24625632-24626131 Arabidopsis thaliana
AT5G61210 1.0kb upstream 1.0kb upstream 3333 true Chr5: 24622299-24625631 Arabidopsis thaliana
AT5G61210 1.0kb upstream 1.0kb upstream 1000 false Chr5: 24622299-24623298 Arabidopsis thaliana
AT5G61210 1.0kb downstream 1.0kb downstream 3333 true Chr5: 24623299-24626631 Arabidopsis thaliana
AT5G61210 1.0kb downstream 1.0kb downstream 1000 false Chr5: 24625632-24626631 Arabidopsis thaliana
AT5G61210 2.0kb upstream 2.0kb upstream 4333 true Chr5: 24621299-24625631 Arabidopsis thaliana
AT5G61210 2.0kb upstream 2.0kb upstream 2000 false Chr5: 24621299-24623298 Arabidopsis thaliana
AT5G61210 2.0kb downstream 2.0kb downstream 4333 true Chr5: 24623299-24627631 Arabidopsis thaliana
AT5G61210 2.0kb downstream 2.0kb downstream 2000 false Chr5: 24625632-24627631 Arabidopsis thaliana
AT5G61210 5.0kb upstream 5.0kb upstream 7333 true Chr5: 24618299-24625631 Arabidopsis thaliana
AT5G61210 5.0kb upstream 5.0kb upstream 5000 false Chr5: 24618299-24623298 Arabidopsis thaliana
AT5G61210 5.0kb downstream 5.0kb downstream 7333 true Chr5: 24623299-24630631 Arabidopsis thaliana
AT5G61210 5.0kb downstream 5.0kb downstream 5000 false Chr5: 24625632-24630631 Arabidopsis thaliana
AT5G61210 10.0kb upstream 10.0kb upstream 12333 true Chr5: 24613299-24625631 Arabidopsis thaliana
AT5G61210 10.0kb upstream 10.0kb upstream 10000 false Chr5: 24613299-24623298 Arabidopsis thaliana
AT5G61210 10.0kb downstream 10.0kb downstream 12333 true Chr5: 24623299-24635631 Arabidopsis thaliana
AT5G61210 10.0kb downstream 10.0kb downstream 10000 false Chr5: 24625632-24635631 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362058 5261 Brassicaceae View MSA
123833723 5264 Brassicales-Malvales View MSA
124342693 5266 SBM View MSA
124241040 5268 Malvidae View MSA
124069233 5270 Rosid View MSA
123745951 5271 Pentapetalae View MSA
122796965 5272 Eudicot View MSA
122050570 5273 Angiosperm View MSA
121349451 5274 Embryophyte View MSA
123428314 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 95.488     High High
cufflinks 69.417     High  
cufflinks 46.185     High Low
cufflinks 51.002     High  
cufflinks 55.359     High  
cufflinks 62.517     High  

0 Strain