Gene : HDA05 A. thaliana TAIR10
Primary Identifier:  ? AT5G61060 Defline:  (1 of 1) KOG1342 - Histone deacetylase complex, catalytic component RPD3
Genomic Order:  5609 Name:  ? AT5G61060
Secondary Identifier:  ? PAC:19673118
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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G61060 0.5kb upstream 0.5kb upstream 4784 true Chr5: 24566783-24571566 Arabidopsis thaliana
AT5G61060 0.5kb upstream 0.5kb upstream 500 false Chr5: 24571067-24571566 Arabidopsis thaliana
AT5G61060 0.5kb downstream 0.5kb downstream 4784 true Chr5: 24566283-24571066 Arabidopsis thaliana
AT5G61060 0.5kb downstream 0.5kb downstream 500 false Chr5: 24566283-24566782 Arabidopsis thaliana
AT5G61060 1.0kb upstream 1.0kb upstream 5284 true Chr5: 24566783-24572066 Arabidopsis thaliana
AT5G61060 1.0kb upstream 1.0kb upstream 1000 false Chr5: 24571067-24572066 Arabidopsis thaliana
AT5G61060 1.0kb downstream 1.0kb downstream 5284 true Chr5: 24565783-24571066 Arabidopsis thaliana
AT5G61060 1.0kb downstream 1.0kb downstream 1000 false Chr5: 24565783-24566782 Arabidopsis thaliana
AT5G61060 2.0kb upstream 2.0kb upstream 6284 true Chr5: 24566783-24573066 Arabidopsis thaliana
AT5G61060 2.0kb upstream 2.0kb upstream 2000 false Chr5: 24571067-24573066 Arabidopsis thaliana
AT5G61060 2.0kb downstream 2.0kb downstream 6284 true Chr5: 24564783-24571066 Arabidopsis thaliana
AT5G61060 2.0kb downstream 2.0kb downstream 2000 false Chr5: 24564783-24566782 Arabidopsis thaliana
AT5G61060 5.0kb upstream 5.0kb upstream 9284 true Chr5: 24566783-24576066 Arabidopsis thaliana
AT5G61060 5.0kb upstream 5.0kb upstream 5000 false Chr5: 24571067-24576066 Arabidopsis thaliana
AT5G61060 5.0kb downstream 5.0kb downstream 9284 true Chr5: 24561783-24571066 Arabidopsis thaliana
AT5G61060 5.0kb downstream 5.0kb downstream 5000 false Chr5: 24561783-24566782 Arabidopsis thaliana
AT5G61060 10.0kb upstream 10.0kb upstream 14284 true Chr5: 24566783-24581066 Arabidopsis thaliana
AT5G61060 10.0kb upstream 10.0kb upstream 10000 false Chr5: 24571067-24581066 Arabidopsis thaliana
AT5G61060 10.0kb downstream 10.0kb downstream 14284 true Chr5: 24556783-24571066 Arabidopsis thaliana
AT5G61060 10.0kb downstream 10.0kb downstream 10000 false Chr5: 24556783-24566782 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367317 5261 Brassicaceae View MSA
123838303 5264 Brassicales-Malvales View MSA
124339544 5266 SBM View MSA
124251429 5268 Malvidae View MSA
124067905 5270 Rosid View MSA
123752884 5271 Pentapetalae View MSA
122793476 5272 Eudicot View MSA
122051091 5273 Angiosperm View MSA
121349302 5274 Embryophyte View MSA
123428156 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.252        
cufflinks 8.51        
cufflinks 3.967       Low
cufflinks 8.36        
cufflinks 5.01        
cufflinks 8.079        

0 Strain