Gene : COB A. thaliana TAIR10
Primary Identifier:  ? AT5G60920 Defline:  (1 of 2) PTHR31673:SF3 - COBRA-LIKE EXTRACELLULAR GLYCOSYL-PHOSPHATIDYL INOSITOL-ANCHORED FAMILY PROTEIN-RELATED
Genomic Order:  5593 Name:  ? AT5G60920
Secondary Identifier:  ? PAC:19668646
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G60920 0.5kb upstream 0.5kb upstream 3434 true Chr5: 24511196-24514629 Arabidopsis thaliana
AT5G60920 0.5kb upstream 0.5kb upstream 500 false Chr5: 24514130-24514629 Arabidopsis thaliana
AT5G60920 0.5kb downstream 0.5kb downstream 3434 true Chr5: 24510696-24514129 Arabidopsis thaliana
AT5G60920 0.5kb downstream 0.5kb downstream 500 false Chr5: 24510696-24511195 Arabidopsis thaliana
AT5G60920 1.0kb upstream 1.0kb upstream 3934 true Chr5: 24511196-24515129 Arabidopsis thaliana
AT5G60920 1.0kb upstream 1.0kb upstream 1000 false Chr5: 24514130-24515129 Arabidopsis thaliana
AT5G60920 1.0kb downstream 1.0kb downstream 3934 true Chr5: 24510196-24514129 Arabidopsis thaliana
AT5G60920 1.0kb downstream 1.0kb downstream 1000 false Chr5: 24510196-24511195 Arabidopsis thaliana
AT5G60920 2.0kb upstream 2.0kb upstream 4934 true Chr5: 24511196-24516129 Arabidopsis thaliana
AT5G60920 2.0kb upstream 2.0kb upstream 2000 false Chr5: 24514130-24516129 Arabidopsis thaliana
AT5G60920 2.0kb downstream 2.0kb downstream 4934 true Chr5: 24509196-24514129 Arabidopsis thaliana
AT5G60920 2.0kb downstream 2.0kb downstream 2000 false Chr5: 24509196-24511195 Arabidopsis thaliana
AT5G60920 5.0kb upstream 5.0kb upstream 7934 true Chr5: 24511196-24519129 Arabidopsis thaliana
AT5G60920 5.0kb upstream 5.0kb upstream 5000 false Chr5: 24514130-24519129 Arabidopsis thaliana
AT5G60920 5.0kb downstream 5.0kb downstream 7934 true Chr5: 24506196-24514129 Arabidopsis thaliana
AT5G60920 5.0kb downstream 5.0kb downstream 5000 false Chr5: 24506196-24511195 Arabidopsis thaliana
AT5G60920 10.0kb upstream 10.0kb upstream 12934 true Chr5: 24511196-24524129 Arabidopsis thaliana
AT5G60920 10.0kb upstream 10.0kb upstream 10000 false Chr5: 24514130-24524129 Arabidopsis thaliana
AT5G60920 10.0kb downstream 10.0kb downstream 12934 true Chr5: 24501196-24514129 Arabidopsis thaliana
AT5G60920 10.0kb downstream 10.0kb downstream 10000 false Chr5: 24501196-24511195 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373995 5261 Brassicaceae View MSA
123831723 5264 Brassicales-Malvales View MSA
124340603 5266 SBM View MSA
124251881 5268 Malvidae View MSA
124062933 5270 Rosid View MSA
123750183 5271 Pentapetalae View MSA
122789403 5272 Eudicot View MSA
122044037 5273 Angiosperm View MSA
121349086 5274 Embryophyte View MSA
123381159 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 76.354     High  
cufflinks 95.15     High  
cufflinks 57.575     High Low
cufflinks 88.893     High  
cufflinks 61.331     High  
cufflinks 120.936     High High

0 Strain