Gene : AT5G60460 A. thaliana TAIR10
Defline:  (1 of 1) PTHR13509//PTHR13509:SF4 - SEC61BETA-PROV PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  5543
Name:  ? AT5G60460 Secondary Identifier:  ? PAC:19669278
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G60460 0.5kb upstream 0.5kb upstream 999 true Chr5: 24317437-24318435 Arabidopsis thaliana
AT5G60460 0.5kb upstream 0.5kb upstream 500 false Chr5: 24317936-24318435 Arabidopsis thaliana
AT5G60460 0.5kb downstream 0.5kb downstream 999 true Chr5: 24316937-24317935 Arabidopsis thaliana
AT5G60460 0.5kb downstream 0.5kb downstream 500 false Chr5: 24316937-24317436 Arabidopsis thaliana
AT5G60460 1.0kb upstream 1.0kb upstream 1499 true Chr5: 24317437-24318935 Arabidopsis thaliana
AT5G60460 1.0kb upstream 1.0kb upstream 1000 false Chr5: 24317936-24318935 Arabidopsis thaliana
AT5G60460 1.0kb downstream 1.0kb downstream 1499 true Chr5: 24316437-24317935 Arabidopsis thaliana
AT5G60460 1.0kb downstream 1.0kb downstream 1000 false Chr5: 24316437-24317436 Arabidopsis thaliana
AT5G60460 2.0kb upstream 2.0kb upstream 2499 true Chr5: 24317437-24319935 Arabidopsis thaliana
AT5G60460 2.0kb upstream 2.0kb upstream 2000 false Chr5: 24317936-24319935 Arabidopsis thaliana
AT5G60460 2.0kb downstream 2.0kb downstream 2499 true Chr5: 24315437-24317935 Arabidopsis thaliana
AT5G60460 2.0kb downstream 2.0kb downstream 2000 false Chr5: 24315437-24317436 Arabidopsis thaliana
AT5G60460 5.0kb upstream 5.0kb upstream 5499 true Chr5: 24317437-24322935 Arabidopsis thaliana
AT5G60460 5.0kb upstream 5.0kb upstream 5000 false Chr5: 24317936-24322935 Arabidopsis thaliana
AT5G60460 5.0kb downstream 5.0kb downstream 5499 true Chr5: 24312437-24317935 Arabidopsis thaliana
AT5G60460 5.0kb downstream 5.0kb downstream 5000 false Chr5: 24312437-24317436 Arabidopsis thaliana
AT5G60460 10.0kb upstream 10.0kb upstream 10499 true Chr5: 24317437-24327935 Arabidopsis thaliana
AT5G60460 10.0kb upstream 10.0kb upstream 10000 false Chr5: 24317936-24327935 Arabidopsis thaliana
AT5G60460 10.0kb downstream 10.0kb downstream 10499 true Chr5: 24307437-24317935 Arabidopsis thaliana
AT5G60460 10.0kb downstream 10.0kb downstream 10000 false Chr5: 24307437-24317436 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360292 5261 Brassicaceae View MSA
123841627 5264 Brassicales-Malvales View MSA
124339196 5266 SBM View MSA
124250955 5268 Malvidae View MSA
124074304 5270 Rosid View MSA
123751679 5271 Pentapetalae View MSA
122797593 5272 Eudicot View MSA
122044826 5273 Angiosperm View MSA
121346729 5274 Embryophyte View MSA
123426765 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.658       Low
cufflinks 11.118       High
cufflinks 5.121        
cufflinks 10.808        
cufflinks 7.544        
cufflinks 7.108        

0 Strain