Gene : AGL62 A. thaliana TAIR10
Primary Identifier:  ? AT5G60440 Defline:  (1 of 1) PTHR11945//PTHR11945:SF185 - MADS BOX PROTEIN // AGAMOUS-LIKE MADS-BOX PROTEIN AGL62
Genomic Order:  5541 Name:  ? AT5G60440
Secondary Identifier:  ? PAC:19665878
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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G60440 0.5kb upstream 0.5kb upstream 1923 true Chr5: 24305794-24307716 Arabidopsis thaliana
AT5G60440 0.5kb upstream 0.5kb upstream 500 false Chr5: 24305794-24306293 Arabidopsis thaliana
AT5G60440 0.5kb downstream 0.5kb downstream 1923 true Chr5: 24306294-24308216 Arabidopsis thaliana
AT5G60440 0.5kb downstream 0.5kb downstream 500 false Chr5: 24307717-24308216 Arabidopsis thaliana
AT5G60440 1.0kb upstream 1.0kb upstream 2423 true Chr5: 24305294-24307716 Arabidopsis thaliana
AT5G60440 1.0kb upstream 1.0kb upstream 1000 false Chr5: 24305294-24306293 Arabidopsis thaliana
AT5G60440 1.0kb downstream 1.0kb downstream 2423 true Chr5: 24306294-24308716 Arabidopsis thaliana
AT5G60440 1.0kb downstream 1.0kb downstream 1000 false Chr5: 24307717-24308716 Arabidopsis thaliana
AT5G60440 2.0kb upstream 2.0kb upstream 3423 true Chr5: 24304294-24307716 Arabidopsis thaliana
AT5G60440 2.0kb upstream 2.0kb upstream 2000 false Chr5: 24304294-24306293 Arabidopsis thaliana
AT5G60440 2.0kb downstream 2.0kb downstream 3423 true Chr5: 24306294-24309716 Arabidopsis thaliana
AT5G60440 2.0kb downstream 2.0kb downstream 2000 false Chr5: 24307717-24309716 Arabidopsis thaliana
AT5G60440 5.0kb upstream 5.0kb upstream 6423 true Chr5: 24301294-24307716 Arabidopsis thaliana
AT5G60440 5.0kb upstream 5.0kb upstream 5000 false Chr5: 24301294-24306293 Arabidopsis thaliana
AT5G60440 5.0kb downstream 5.0kb downstream 6423 true Chr5: 24306294-24312716 Arabidopsis thaliana
AT5G60440 5.0kb downstream 5.0kb downstream 5000 false Chr5: 24307717-24312716 Arabidopsis thaliana
AT5G60440 10.0kb upstream 10.0kb upstream 11423 true Chr5: 24296294-24307716 Arabidopsis thaliana
AT5G60440 10.0kb upstream 10.0kb upstream 10000 false Chr5: 24296294-24306293 Arabidopsis thaliana
AT5G60440 10.0kb downstream 10.0kb downstream 11423 true Chr5: 24306294-24317716 Arabidopsis thaliana
AT5G60440 10.0kb downstream 10.0kb downstream 10000 false Chr5: 24307717-24317716 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380107 5261 Brassicaceae View MSA
123834694 5264 Brassicales-Malvales View MSA
124341345 5266 SBM View MSA
124252188 5268 Malvidae View MSA
124069913 5270 Rosid View MSA
123753664 5271 Pentapetalae View MSA
122797561 5272 Eudicot View MSA
122050867 5273 Angiosperm View MSA
121350957 5274 Embryophyte View MSA
123424057 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.336        
cufflinks 1.404        
cufflinks 0.985        
cufflinks 1.69       High
cufflinks 0.885       Low
cufflinks 1.416        

0 Strain