Gene : AT5G60530 A. thaliana TAIR10
Defline:  (1 of 6) PF06830 - Root cap (Root_cap) Genomic Order:  5550
Name:  ? AT5G60530 Secondary Identifier:  ? PAC:19671173
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G60530 0.5kb upstream 0.5kb upstream 2376 true Chr5: 24333907-24336282 Arabidopsis thaliana
AT5G60530 0.5kb upstream 0.5kb upstream 500 false Chr5: 24335783-24336282 Arabidopsis thaliana
AT5G60530 0.5kb downstream 0.5kb downstream 2376 true Chr5: 24333407-24335782 Arabidopsis thaliana
AT5G60530 0.5kb downstream 0.5kb downstream 500 false Chr5: 24333407-24333906 Arabidopsis thaliana
AT5G60530 1.0kb upstream 1.0kb upstream 2876 true Chr5: 24333907-24336782 Arabidopsis thaliana
AT5G60530 1.0kb upstream 1.0kb upstream 1000 false Chr5: 24335783-24336782 Arabidopsis thaliana
AT5G60530 1.0kb downstream 1.0kb downstream 2876 true Chr5: 24332907-24335782 Arabidopsis thaliana
AT5G60530 1.0kb downstream 1.0kb downstream 1000 false Chr5: 24332907-24333906 Arabidopsis thaliana
AT5G60530 2.0kb upstream 2.0kb upstream 3876 true Chr5: 24333907-24337782 Arabidopsis thaliana
AT5G60530 2.0kb upstream 2.0kb upstream 2000 false Chr5: 24335783-24337782 Arabidopsis thaliana
AT5G60530 2.0kb downstream 2.0kb downstream 3876 true Chr5: 24331907-24335782 Arabidopsis thaliana
AT5G60530 2.0kb downstream 2.0kb downstream 2000 false Chr5: 24331907-24333906 Arabidopsis thaliana
AT5G60530 5.0kb upstream 5.0kb upstream 6876 true Chr5: 24333907-24340782 Arabidopsis thaliana
AT5G60530 5.0kb upstream 5.0kb upstream 5000 false Chr5: 24335783-24340782 Arabidopsis thaliana
AT5G60530 5.0kb downstream 5.0kb downstream 6876 true Chr5: 24328907-24335782 Arabidopsis thaliana
AT5G60530 5.0kb downstream 5.0kb downstream 5000 false Chr5: 24328907-24333906 Arabidopsis thaliana
AT5G60530 10.0kb upstream 10.0kb upstream 11876 true Chr5: 24333907-24345782 Arabidopsis thaliana
AT5G60530 10.0kb upstream 10.0kb upstream 10000 false Chr5: 24335783-24345782 Arabidopsis thaliana
AT5G60530 10.0kb downstream 10.0kb downstream 11876 true Chr5: 24323907-24335782 Arabidopsis thaliana
AT5G60530 10.0kb downstream 10.0kb downstream 10000 false Chr5: 24323907-24333906 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378455 5261 Brassicaceae View MSA
123835508 5264 Brassicales-Malvales View MSA
124343084 5266 SBM View MSA
124246752 5268 Malvidae View MSA
124061597 5270 Rosid View MSA
123752203 5271 Pentapetalae View MSA
122797654 5272 Eudicot View MSA
122050447 5273 Angiosperm View MSA
121349873 5274 Embryophyte View MSA
123381481 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.007     Low Low
cufflinks 3.461        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 4.201        
cufflinks 0.006     Low Low
cufflinks 6.634        

0 Strain