Gene : SIZ1 A. thaliana TAIR10
Primary Identifier:  ? AT5G60410 Defline:  (1 of 1) PTHR10782//PTHR10782:SF34 - ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN // E3 SUMO-PROTEIN LIGASE SIZ1
Genomic Order:  5539 Name:  ? AT5G60410
Secondary Identifier:  ? PAC:19670046
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G60410 0.5kb upstream 0.5kb upstream 6758 true Chr5: 24294390-24301147 Arabidopsis thaliana
AT5G60410 0.5kb upstream 0.5kb upstream 500 false Chr5: 24294390-24294889 Arabidopsis thaliana
AT5G60410 0.5kb downstream 0.5kb downstream 6758 true Chr5: 24294890-24301647 Arabidopsis thaliana
AT5G60410 0.5kb downstream 0.5kb downstream 500 false Chr5: 24301148-24301647 Arabidopsis thaliana
AT5G60410 1.0kb upstream 1.0kb upstream 7258 true Chr5: 24293890-24301147 Arabidopsis thaliana
AT5G60410 1.0kb upstream 1.0kb upstream 1000 false Chr5: 24293890-24294889 Arabidopsis thaliana
AT5G60410 1.0kb downstream 1.0kb downstream 7258 true Chr5: 24294890-24302147 Arabidopsis thaliana
AT5G60410 1.0kb downstream 1.0kb downstream 1000 false Chr5: 24301148-24302147 Arabidopsis thaliana
AT5G60410 2.0kb upstream 2.0kb upstream 8258 true Chr5: 24292890-24301147 Arabidopsis thaliana
AT5G60410 2.0kb upstream 2.0kb upstream 2000 false Chr5: 24292890-24294889 Arabidopsis thaliana
AT5G60410 2.0kb downstream 2.0kb downstream 8258 true Chr5: 24294890-24303147 Arabidopsis thaliana
AT5G60410 2.0kb downstream 2.0kb downstream 2000 false Chr5: 24301148-24303147 Arabidopsis thaliana
AT5G60410 5.0kb upstream 5.0kb upstream 11258 true Chr5: 24289890-24301147 Arabidopsis thaliana
AT5G60410 5.0kb upstream 5.0kb upstream 5000 false Chr5: 24289890-24294889 Arabidopsis thaliana
AT5G60410 5.0kb downstream 5.0kb downstream 11258 true Chr5: 24294890-24306147 Arabidopsis thaliana
AT5G60410 5.0kb downstream 5.0kb downstream 5000 false Chr5: 24301148-24306147 Arabidopsis thaliana
AT5G60410 10.0kb upstream 10.0kb upstream 16258 true Chr5: 24284890-24301147 Arabidopsis thaliana
AT5G60410 10.0kb upstream 10.0kb upstream 10000 false Chr5: 24284890-24294889 Arabidopsis thaliana
AT5G60410 10.0kb downstream 10.0kb downstream 16258 true Chr5: 24294890-24311147 Arabidopsis thaliana
AT5G60410 10.0kb downstream 10.0kb downstream 10000 false Chr5: 24301148-24311147 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375146 5261 Brassicaceae View MSA
123836950 5264 Brassicales-Malvales View MSA
124338996 5266 SBM View MSA
124242030 5268 Malvidae View MSA
124063048 5270 Rosid View MSA
123737039 5271 Pentapetalae View MSA
122786497 5272 Eudicot View MSA
122046306 5273 Angiosperm View MSA
121350287 5274 Embryophyte View MSA
123426833 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.743        
cufflinks 3.647        
cufflinks 2.943       Low
cufflinks 4.148       High
cufflinks 3.629        
cufflinks 3.523        

0 Strain