Gene : AT5G60142 A. thaliana TAIR10
Defline:  (1 of 6) PTHR31920//PTHR31920:SF15 - FAMILY NOT NAMED // B3 DOMAIN-CONTAINING PROTEIN REM20-RELATED Genomic Order:  5511
Name:  ? AT5G60142 Secondary Identifier:  ? PAC:19669317
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G60142 0.5kb upstream 0.5kb upstream 2012 true Chr5: 24216180-24218191 Arabidopsis thaliana
AT5G60142 0.5kb upstream 0.5kb upstream 500 false Chr5: 24217692-24218191 Arabidopsis thaliana
AT5G60142 0.5kb downstream 0.5kb downstream 2012 true Chr5: 24215680-24217691 Arabidopsis thaliana
AT5G60142 0.5kb downstream 0.5kb downstream 500 false Chr5: 24215680-24216179 Arabidopsis thaliana
AT5G60142 1.0kb upstream 1.0kb upstream 2512 true Chr5: 24216180-24218691 Arabidopsis thaliana
AT5G60142 1.0kb upstream 1.0kb upstream 1000 false Chr5: 24217692-24218691 Arabidopsis thaliana
AT5G60142 1.0kb downstream 1.0kb downstream 2512 true Chr5: 24215180-24217691 Arabidopsis thaliana
AT5G60142 1.0kb downstream 1.0kb downstream 1000 false Chr5: 24215180-24216179 Arabidopsis thaliana
AT5G60142 2.0kb upstream 2.0kb upstream 3512 true Chr5: 24216180-24219691 Arabidopsis thaliana
AT5G60142 2.0kb upstream 2.0kb upstream 2000 false Chr5: 24217692-24219691 Arabidopsis thaliana
AT5G60142 2.0kb downstream 2.0kb downstream 3512 true Chr5: 24214180-24217691 Arabidopsis thaliana
AT5G60142 2.0kb downstream 2.0kb downstream 2000 false Chr5: 24214180-24216179 Arabidopsis thaliana
AT5G60142 5.0kb upstream 5.0kb upstream 6512 true Chr5: 24216180-24222691 Arabidopsis thaliana
AT5G60142 5.0kb upstream 5.0kb upstream 5000 false Chr5: 24217692-24222691 Arabidopsis thaliana
AT5G60142 5.0kb downstream 5.0kb downstream 6512 true Chr5: 24211180-24217691 Arabidopsis thaliana
AT5G60142 5.0kb downstream 5.0kb downstream 5000 false Chr5: 24211180-24216179 Arabidopsis thaliana
AT5G60142 10.0kb upstream 10.0kb upstream 11512 true Chr5: 24216180-24227691 Arabidopsis thaliana
AT5G60142 10.0kb upstream 10.0kb upstream 10000 false Chr5: 24217692-24227691 Arabidopsis thaliana
AT5G60142 10.0kb downstream 10.0kb downstream 11512 true Chr5: 24206180-24217691 Arabidopsis thaliana
AT5G60142 10.0kb downstream 10.0kb downstream 10000 false Chr5: 24206180-24216179 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122343582 5261 Brassicaceae View MSA
123841121 5264 Brassicales-Malvales View MSA
124350666 5266 SBM View MSA
124254086 5268 Malvidae View MSA
124073823 5270 Rosid View MSA
123753418 5271 Pentapetalae View MSA
122797829 5272 Eudicot View MSA
122050133 5273 Angiosperm View MSA
121350826 5274 Embryophyte View MSA
123427153 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.189       Low
cufflinks 7.214       High
cufflinks 2.051        
cufflinks 6.42        
cufflinks 1.672        
cufflinks 5.108        

0 Strain