Gene : SEN2 A. thaliana TAIR10
Primary Identifier:  ? AT5G60230 Defline:  (1 of 3) 4.6.1.16 - tRNA-intron lyase / tRNA splicing endonuclease
Genomic Order:  5520 Name:  ? AT5G60230
Secondary Identifier:  ? PAC:19666987
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-6689 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G60230 0.5kb upstream 0.5kb upstream 2023 true Chr5: 24250091-24252113 Arabidopsis thaliana
AT5G60230 0.5kb upstream 0.5kb upstream 500 false Chr5: 24251614-24252113 Arabidopsis thaliana
AT5G60230 0.5kb downstream 0.5kb downstream 2023 true Chr5: 24249591-24251613 Arabidopsis thaliana
AT5G60230 0.5kb downstream 0.5kb downstream 500 false Chr5: 24249591-24250090 Arabidopsis thaliana
AT5G60230 1.0kb upstream 1.0kb upstream 2523 true Chr5: 24250091-24252613 Arabidopsis thaliana
AT5G60230 1.0kb upstream 1.0kb upstream 1000 false Chr5: 24251614-24252613 Arabidopsis thaliana
AT5G60230 1.0kb downstream 1.0kb downstream 2523 true Chr5: 24249091-24251613 Arabidopsis thaliana
AT5G60230 1.0kb downstream 1.0kb downstream 1000 false Chr5: 24249091-24250090 Arabidopsis thaliana
AT5G60230 2.0kb upstream 2.0kb upstream 3523 true Chr5: 24250091-24253613 Arabidopsis thaliana
AT5G60230 2.0kb upstream 2.0kb upstream 2000 false Chr5: 24251614-24253613 Arabidopsis thaliana
AT5G60230 2.0kb downstream 2.0kb downstream 3523 true Chr5: 24248091-24251613 Arabidopsis thaliana
AT5G60230 2.0kb downstream 2.0kb downstream 2000 false Chr5: 24248091-24250090 Arabidopsis thaliana
AT5G60230 5.0kb upstream 5.0kb upstream 6523 true Chr5: 24250091-24256613 Arabidopsis thaliana
AT5G60230 5.0kb upstream 5.0kb upstream 5000 false Chr5: 24251614-24256613 Arabidopsis thaliana
AT5G60230 5.0kb downstream 5.0kb downstream 6523 true Chr5: 24245091-24251613 Arabidopsis thaliana
AT5G60230 5.0kb downstream 5.0kb downstream 5000 false Chr5: 24245091-24250090 Arabidopsis thaliana
AT5G60230 10.0kb upstream 10.0kb upstream 11523 true Chr5: 24250091-24261613 Arabidopsis thaliana
AT5G60230 10.0kb upstream 10.0kb upstream 10000 false Chr5: 24251614-24261613 Arabidopsis thaliana
AT5G60230 10.0kb downstream 10.0kb downstream 11523 true Chr5: 24240091-24251613 Arabidopsis thaliana
AT5G60230 10.0kb downstream 10.0kb downstream 10000 false Chr5: 24240091-24250090 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041240 5273 Angiosperm View MSA
122373562 5261 Brassicaceae View MSA
123840604 5264 Brassicales-Malvales View MSA
124346911 5266 SBM View MSA
124240586 5268 Malvidae View MSA
124064519 5270 Rosid View MSA
123739625 5271 Pentapetalae View MSA
122788641 5272 Eudicot View MSA
123429143 5275 Viridiplantae View MSA
121344093 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.253        
cufflinks 1.724        
cufflinks 0.925       Low
cufflinks 1.664        
cufflinks 0.988       Low
cufflinks 1.834       High

0 Strain