Gene : LAC17 A. thaliana TAIR10
Primary Identifier:  ? AT5G60020 Defline:  (1 of 1) PTHR11709//PTHR11709:SF66 - MULTI-COPPER OXIDASE // LACCASE-17
Genomic Order:  5498 Name:  ? AT5G60020
Secondary Identifier:  ? PAC:19670364
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5466 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G60020 0.5kb upstream 0.5kb upstream 2967 true Chr5: 24167496-24170462 Arabidopsis thaliana
AT5G60020 0.5kb upstream 0.5kb upstream 500 false Chr5: 24167496-24167995 Arabidopsis thaliana
AT5G60020 0.5kb downstream 0.5kb downstream 2967 true Chr5: 24167996-24170962 Arabidopsis thaliana
AT5G60020 0.5kb downstream 0.5kb downstream 500 false Chr5: 24170463-24170962 Arabidopsis thaliana
AT5G60020 1.0kb upstream 1.0kb upstream 3467 true Chr5: 24166996-24170462 Arabidopsis thaliana
AT5G60020 1.0kb upstream 1.0kb upstream 1000 false Chr5: 24166996-24167995 Arabidopsis thaliana
AT5G60020 1.0kb downstream 1.0kb downstream 3467 true Chr5: 24167996-24171462 Arabidopsis thaliana
AT5G60020 1.0kb downstream 1.0kb downstream 1000 false Chr5: 24170463-24171462 Arabidopsis thaliana
AT5G60020 2.0kb upstream 2.0kb upstream 4467 true Chr5: 24165996-24170462 Arabidopsis thaliana
AT5G60020 2.0kb upstream 2.0kb upstream 2000 false Chr5: 24165996-24167995 Arabidopsis thaliana
AT5G60020 2.0kb downstream 2.0kb downstream 4467 true Chr5: 24167996-24172462 Arabidopsis thaliana
AT5G60020 2.0kb downstream 2.0kb downstream 2000 false Chr5: 24170463-24172462 Arabidopsis thaliana
AT5G60020 5.0kb upstream 5.0kb upstream 7467 true Chr5: 24162996-24170462 Arabidopsis thaliana
AT5G60020 5.0kb upstream 5.0kb upstream 5000 false Chr5: 24162996-24167995 Arabidopsis thaliana
AT5G60020 5.0kb downstream 5.0kb downstream 7467 true Chr5: 24167996-24175462 Arabidopsis thaliana
AT5G60020 5.0kb downstream 5.0kb downstream 5000 false Chr5: 24170463-24175462 Arabidopsis thaliana
AT5G60020 10.0kb upstream 10.0kb upstream 12467 true Chr5: 24157996-24170462 Arabidopsis thaliana
AT5G60020 10.0kb upstream 10.0kb upstream 10000 false Chr5: 24157996-24167995 Arabidopsis thaliana
AT5G60020 10.0kb downstream 10.0kb downstream 12467 true Chr5: 24167996-24180462 Arabidopsis thaliana
AT5G60020 10.0kb downstream 10.0kb downstream 10000 false Chr5: 24170463-24180462 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361534 5261 Brassicaceae View MSA
123836632 5264 Brassicales-Malvales View MSA
124344655 5266 SBM View MSA
124251749 5268 Malvidae View MSA
124062715 5270 Rosid View MSA
123751220 5271 Pentapetalae View MSA
122795105 5272 Eudicot View MSA
122050716 5273 Angiosperm View MSA
121350155 5274 Embryophyte View MSA
123428014 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.504        
cufflinks 5.248        
cufflinks 3.988        
cufflinks 12.368       High
cufflinks 3.166       Low
cufflinks 14.184       High

0 Strain