Gene : AT5G59830 A. thaliana TAIR10
Defline:  (1 of 18) PF16135 - TPL-binding domain in jasmonate signalling (Jas) Genomic Order:  5478
Name:  ? AT5G59830 Secondary Identifier:  ? PAC:19670012
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G59830 0.5kb upstream 0.5kb upstream 2656 true Chr5: 24104578-24107233 Arabidopsis thaliana
AT5G59830 0.5kb upstream 0.5kb upstream 500 false Chr5: 24104578-24105077 Arabidopsis thaliana
AT5G59830 0.5kb downstream 0.5kb downstream 2656 true Chr5: 24105078-24107733 Arabidopsis thaliana
AT5G59830 0.5kb downstream 0.5kb downstream 500 false Chr5: 24107234-24107733 Arabidopsis thaliana
AT5G59830 1.0kb upstream 1.0kb upstream 3156 true Chr5: 24104078-24107233 Arabidopsis thaliana
AT5G59830 1.0kb upstream 1.0kb upstream 1000 false Chr5: 24104078-24105077 Arabidopsis thaliana
AT5G59830 1.0kb downstream 1.0kb downstream 3156 true Chr5: 24105078-24108233 Arabidopsis thaliana
AT5G59830 1.0kb downstream 1.0kb downstream 1000 false Chr5: 24107234-24108233 Arabidopsis thaliana
AT5G59830 2.0kb upstream 2.0kb upstream 4156 true Chr5: 24103078-24107233 Arabidopsis thaliana
AT5G59830 2.0kb upstream 2.0kb upstream 2000 false Chr5: 24103078-24105077 Arabidopsis thaliana
AT5G59830 2.0kb downstream 2.0kb downstream 4156 true Chr5: 24105078-24109233 Arabidopsis thaliana
AT5G59830 2.0kb downstream 2.0kb downstream 2000 false Chr5: 24107234-24109233 Arabidopsis thaliana
AT5G59830 5.0kb upstream 5.0kb upstream 7156 true Chr5: 24100078-24107233 Arabidopsis thaliana
AT5G59830 5.0kb upstream 5.0kb upstream 5000 false Chr5: 24100078-24105077 Arabidopsis thaliana
AT5G59830 5.0kb downstream 5.0kb downstream 7156 true Chr5: 24105078-24112233 Arabidopsis thaliana
AT5G59830 5.0kb downstream 5.0kb downstream 5000 false Chr5: 24107234-24112233 Arabidopsis thaliana
AT5G59830 10.0kb upstream 10.0kb upstream 12156 true Chr5: 24095078-24107233 Arabidopsis thaliana
AT5G59830 10.0kb upstream 10.0kb upstream 10000 false Chr5: 24095078-24105077 Arabidopsis thaliana
AT5G59830 10.0kb downstream 10.0kb downstream 12156 true Chr5: 24105078-24117233 Arabidopsis thaliana
AT5G59830 10.0kb downstream 10.0kb downstream 10000 false Chr5: 24107234-24117233 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365753 5261 Brassicaceae View MSA
123834835 5264 Brassicales-Malvales View MSA
124340755 5266 SBM View MSA
124237699 5268 Malvidae View MSA
124065450 5270 Rosid View MSA
123747463 5271 Pentapetalae View MSA
122794643 5272 Eudicot View MSA
122051104 5273 Angiosperm View MSA
121312296 5274 Embryophyte View MSA
123349483 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.317        
cufflinks 7.453       High
cufflinks 4.67        
cufflinks 7.82       High
cufflinks 4.521       Low
cufflinks 6.281        

0 Strain