Gene : HCA2 A. thaliana TAIR10
Primary Identifier:  ? AT5G62940 Defline:  (1 of 36) PF02701 - Dof domain, zinc finger (zf-Dof)
Genomic Order:  5803 Name:  ? AT5G62940
Secondary Identifier:  ? PAC:19669604
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G62940 0.5kb upstream 0.5kb upstream 2263 true Chr5: 25256919-25259181 Arabidopsis thaliana
AT5G62940 0.5kb upstream 0.5kb upstream 500 false Chr5: 25258682-25259181 Arabidopsis thaliana
AT5G62940 0.5kb downstream 0.5kb downstream 2263 true Chr5: 25256419-25258681 Arabidopsis thaliana
AT5G62940 0.5kb downstream 0.5kb downstream 500 false Chr5: 25256419-25256918 Arabidopsis thaliana
AT5G62940 1.0kb upstream 1.0kb upstream 2763 true Chr5: 25256919-25259681 Arabidopsis thaliana
AT5G62940 1.0kb upstream 1.0kb upstream 1000 false Chr5: 25258682-25259681 Arabidopsis thaliana
AT5G62940 1.0kb downstream 1.0kb downstream 2763 true Chr5: 25255919-25258681 Arabidopsis thaliana
AT5G62940 1.0kb downstream 1.0kb downstream 1000 false Chr5: 25255919-25256918 Arabidopsis thaliana
AT5G62940 2.0kb upstream 2.0kb upstream 3763 true Chr5: 25256919-25260681 Arabidopsis thaliana
AT5G62940 2.0kb upstream 2.0kb upstream 2000 false Chr5: 25258682-25260681 Arabidopsis thaliana
AT5G62940 2.0kb downstream 2.0kb downstream 3763 true Chr5: 25254919-25258681 Arabidopsis thaliana
AT5G62940 2.0kb downstream 2.0kb downstream 2000 false Chr5: 25254919-25256918 Arabidopsis thaliana
AT5G62940 5.0kb upstream 5.0kb upstream 6763 true Chr5: 25256919-25263681 Arabidopsis thaliana
AT5G62940 5.0kb upstream 5.0kb upstream 5000 false Chr5: 25258682-25263681 Arabidopsis thaliana
AT5G62940 5.0kb downstream 5.0kb downstream 6763 true Chr5: 25251919-25258681 Arabidopsis thaliana
AT5G62940 5.0kb downstream 5.0kb downstream 5000 false Chr5: 25251919-25256918 Arabidopsis thaliana
AT5G62940 10.0kb upstream 10.0kb upstream 11763 true Chr5: 25256919-25268681 Arabidopsis thaliana
AT5G62940 10.0kb upstream 10.0kb upstream 10000 false Chr5: 25258682-25268681 Arabidopsis thaliana
AT5G62940 10.0kb downstream 10.0kb downstream 11763 true Chr5: 25246919-25258681 Arabidopsis thaliana
AT5G62940 10.0kb downstream 10.0kb downstream 10000 false Chr5: 25246919-25256918 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361688 5261 Brassicaceae View MSA
123840381 5264 Brassicales-Malvales View MSA
124340052 5266 SBM View MSA
124253447 5268 Malvidae View MSA
124068881 5270 Rosid View MSA
123743079 5271 Pentapetalae View MSA
122797723 5272 Eudicot View MSA
122049615 5273 Angiosperm View MSA
121349903 5274 Embryophyte View MSA
123427226 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.891        
cufflinks 9.165       High
cufflinks 3.233        
cufflinks 8.895        
cufflinks 2.004       Low
cufflinks 7.306        

0 Strain