Gene : AT5G62200 A. thaliana TAIR10
Defline:  (1 of 3) PTHR31718:SF8 - EMBRYO-SPECIFIC PROTEIN 3 Genomic Order:  5727
Name:  ? AT5G62200 Secondary Identifier:  ? PAC:19670626
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G62200 0.5kb upstream 0.5kb upstream 1976 true Chr5: 24984236-24986211 Arabidopsis thaliana
AT5G62200 0.5kb upstream 0.5kb upstream 500 false Chr5: 24985712-24986211 Arabidopsis thaliana
AT5G62200 0.5kb downstream 0.5kb downstream 1976 true Chr5: 24983736-24985711 Arabidopsis thaliana
AT5G62200 0.5kb downstream 0.5kb downstream 500 false Chr5: 24983736-24984235 Arabidopsis thaliana
AT5G62200 1.0kb upstream 1.0kb upstream 2476 true Chr5: 24984236-24986711 Arabidopsis thaliana
AT5G62200 1.0kb upstream 1.0kb upstream 1000 false Chr5: 24985712-24986711 Arabidopsis thaliana
AT5G62200 1.0kb downstream 1.0kb downstream 2476 true Chr5: 24983236-24985711 Arabidopsis thaliana
AT5G62200 1.0kb downstream 1.0kb downstream 1000 false Chr5: 24983236-24984235 Arabidopsis thaliana
AT5G62200 2.0kb upstream 2.0kb upstream 3476 true Chr5: 24984236-24987711 Arabidopsis thaliana
AT5G62200 2.0kb upstream 2.0kb upstream 2000 false Chr5: 24985712-24987711 Arabidopsis thaliana
AT5G62200 2.0kb downstream 2.0kb downstream 3476 true Chr5: 24982236-24985711 Arabidopsis thaliana
AT5G62200 2.0kb downstream 2.0kb downstream 2000 false Chr5: 24982236-24984235 Arabidopsis thaliana
AT5G62200 5.0kb upstream 5.0kb upstream 6476 true Chr5: 24984236-24990711 Arabidopsis thaliana
AT5G62200 5.0kb upstream 5.0kb upstream 5000 false Chr5: 24985712-24990711 Arabidopsis thaliana
AT5G62200 5.0kb downstream 5.0kb downstream 6476 true Chr5: 24979236-24985711 Arabidopsis thaliana
AT5G62200 5.0kb downstream 5.0kb downstream 5000 false Chr5: 24979236-24984235 Arabidopsis thaliana
AT5G62200 10.0kb upstream 10.0kb upstream 11476 true Chr5: 24984236-24995711 Arabidopsis thaliana
AT5G62200 10.0kb upstream 10.0kb upstream 10000 false Chr5: 24985712-24995711 Arabidopsis thaliana
AT5G62200 10.0kb downstream 10.0kb downstream 11476 true Chr5: 24974236-24985711 Arabidopsis thaliana
AT5G62200 10.0kb downstream 10.0kb downstream 10000 false Chr5: 24974236-24984235 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369802 5261 Brassicaceae View MSA
123839417 5264 Brassicales-Malvales View MSA
124347670 5266 SBM View MSA
124251056 5268 Malvidae View MSA
124070203 5270 Rosid View MSA
123746143 5271 Pentapetalae View MSA
122796857 5272 Eudicot View MSA
122048426 5273 Angiosperm View MSA
121310965 5274 Embryophyte View MSA
123348331 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.966       High
cufflinks 19.187        
cufflinks 19.871        
cufflinks 15.695       Low
cufflinks 19.827        
cufflinks 15.66       Low

0 Strain