Gene : AGD1 A. thaliana TAIR10
Primary Identifier:  ? AT5G61980 Defline:  (1 of 2) PTHR23180//PTHR23180:SF284 - CENTAURIN/ARF // ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD3
Genomic Order:  5703 Name:  ? AT5G61980
Secondary Identifier:  ? PAC:19667590
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G61980 0.5kb upstream 0.5kb upstream 6002 true Chr5: 24893972-24899973 Arabidopsis thaliana
AT5G61980 0.5kb upstream 0.5kb upstream 500 false Chr5: 24893972-24894471 Arabidopsis thaliana
AT5G61980 0.5kb downstream 0.5kb downstream 6002 true Chr5: 24894472-24900473 Arabidopsis thaliana
AT5G61980 0.5kb downstream 0.5kb downstream 500 false Chr5: 24899974-24900473 Arabidopsis thaliana
AT5G61980 1.0kb upstream 1.0kb upstream 6502 true Chr5: 24893472-24899973 Arabidopsis thaliana
AT5G61980 1.0kb upstream 1.0kb upstream 1000 false Chr5: 24893472-24894471 Arabidopsis thaliana
AT5G61980 1.0kb downstream 1.0kb downstream 6502 true Chr5: 24894472-24900973 Arabidopsis thaliana
AT5G61980 1.0kb downstream 1.0kb downstream 1000 false Chr5: 24899974-24900973 Arabidopsis thaliana
AT5G61980 2.0kb upstream 2.0kb upstream 7502 true Chr5: 24892472-24899973 Arabidopsis thaliana
AT5G61980 2.0kb upstream 2.0kb upstream 2000 false Chr5: 24892472-24894471 Arabidopsis thaliana
AT5G61980 2.0kb downstream 2.0kb downstream 7502 true Chr5: 24894472-24901973 Arabidopsis thaliana
AT5G61980 2.0kb downstream 2.0kb downstream 2000 false Chr5: 24899974-24901973 Arabidopsis thaliana
AT5G61980 5.0kb upstream 5.0kb upstream 10502 true Chr5: 24889472-24899973 Arabidopsis thaliana
AT5G61980 5.0kb upstream 5.0kb upstream 5000 false Chr5: 24889472-24894471 Arabidopsis thaliana
AT5G61980 5.0kb downstream 5.0kb downstream 10502 true Chr5: 24894472-24904973 Arabidopsis thaliana
AT5G61980 5.0kb downstream 5.0kb downstream 5000 false Chr5: 24899974-24904973 Arabidopsis thaliana
AT5G61980 10.0kb upstream 10.0kb upstream 15502 true Chr5: 24884472-24899973 Arabidopsis thaliana
AT5G61980 10.0kb upstream 10.0kb upstream 10000 false Chr5: 24884472-24894471 Arabidopsis thaliana
AT5G61980 10.0kb downstream 10.0kb downstream 15502 true Chr5: 24894472-24909973 Arabidopsis thaliana
AT5G61980 10.0kb downstream 10.0kb downstream 10000 false Chr5: 24899974-24909973 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363024 5261 Brassicaceae View MSA
123829920 5264 Brassicales-Malvales View MSA
124321637 5266 SBM View MSA
124247380 5268 Malvidae View MSA
124066460 5270 Rosid View MSA
123753226 5271 Pentapetalae View MSA
122787909 5272 Eudicot View MSA
122045585 5273 Angiosperm View MSA
121349656 5274 Embryophyte View MSA
123428285 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.419        
cufflinks 1.152        
cufflinks 0.345        
cufflinks 1.22        
cufflinks 0.237     Low Low
cufflinks 1.503       High

0 Strain