Gene : OXA1 A. thaliana TAIR10
Primary Identifier:  ? AT5G62050 Defline:  (1 of 2) PTHR12428//PTHR12428:SF23 - OXA1 // SUBFAMILY NOT NAMED
Genomic Order:  5710 Name:  ? AT5G62050
Secondary Identifier:  ? PAC:19670627
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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G62050 0.5kb upstream 0.5kb upstream 4041 true Chr5: 24923774-24927814 Arabidopsis thaliana
AT5G62050 0.5kb upstream 0.5kb upstream 500 false Chr5: 24927315-24927814 Arabidopsis thaliana
AT5G62050 0.5kb downstream 0.5kb downstream 4041 true Chr5: 24923274-24927314 Arabidopsis thaliana
AT5G62050 0.5kb downstream 0.5kb downstream 500 false Chr5: 24923274-24923773 Arabidopsis thaliana
AT5G62050 1.0kb upstream 1.0kb upstream 4541 true Chr5: 24923774-24928314 Arabidopsis thaliana
AT5G62050 1.0kb upstream 1.0kb upstream 1000 false Chr5: 24927315-24928314 Arabidopsis thaliana
AT5G62050 1.0kb downstream 1.0kb downstream 4541 true Chr5: 24922774-24927314 Arabidopsis thaliana
AT5G62050 1.0kb downstream 1.0kb downstream 1000 false Chr5: 24922774-24923773 Arabidopsis thaliana
AT5G62050 2.0kb upstream 2.0kb upstream 5541 true Chr5: 24923774-24929314 Arabidopsis thaliana
AT5G62050 2.0kb upstream 2.0kb upstream 2000 false Chr5: 24927315-24929314 Arabidopsis thaliana
AT5G62050 2.0kb downstream 2.0kb downstream 5541 true Chr5: 24921774-24927314 Arabidopsis thaliana
AT5G62050 2.0kb downstream 2.0kb downstream 2000 false Chr5: 24921774-24923773 Arabidopsis thaliana
AT5G62050 5.0kb upstream 5.0kb upstream 8541 true Chr5: 24923774-24932314 Arabidopsis thaliana
AT5G62050 5.0kb upstream 5.0kb upstream 5000 false Chr5: 24927315-24932314 Arabidopsis thaliana
AT5G62050 5.0kb downstream 5.0kb downstream 8541 true Chr5: 24918774-24927314 Arabidopsis thaliana
AT5G62050 5.0kb downstream 5.0kb downstream 5000 false Chr5: 24918774-24923773 Arabidopsis thaliana
AT5G62050 10.0kb upstream 10.0kb upstream 13541 true Chr5: 24923774-24937314 Arabidopsis thaliana
AT5G62050 10.0kb upstream 10.0kb upstream 10000 false Chr5: 24927315-24937314 Arabidopsis thaliana
AT5G62050 10.0kb downstream 10.0kb downstream 13541 true Chr5: 24913774-24927314 Arabidopsis thaliana
AT5G62050 10.0kb downstream 10.0kb downstream 10000 false Chr5: 24913774-24923773 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365059 5261 Brassicaceae View MSA
123827373 5264 Brassicales-Malvales View MSA
124341081 5266 SBM View MSA
124242926 5268 Malvidae View MSA
124065140 5270 Rosid View MSA
123750990 5271 Pentapetalae View MSA
122794726 5272 Eudicot View MSA
122051610 5273 Angiosperm View MSA
121347323 5274 Embryophyte View MSA
123428331 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.543       Low
cufflinks 11.72        
cufflinks 11.219        
cufflinks 12.328       High
cufflinks 10.885        
cufflinks 10.817        

0 Strain