Gene : PPAN A. thaliana TAIR10
Primary Identifier:  ? AT5G61770 Defline:  (1 of 1) K14859 - ribosome biogenesis protein SSF1/2 (SSF1_2)
Genomic Order:  5683 Name:  ? AT5G61770
Secondary Identifier:  ? PAC:19665696
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0 Pathways

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G61770 0.5kb upstream 0.5kb upstream 2599 true Chr5: 24815108-24817706 Arabidopsis thaliana
AT5G61770 0.5kb upstream 0.5kb upstream 500 false Chr5: 24815108-24815607 Arabidopsis thaliana
AT5G61770 0.5kb downstream 0.5kb downstream 2599 true Chr5: 24815608-24818206 Arabidopsis thaliana
AT5G61770 0.5kb downstream 0.5kb downstream 500 false Chr5: 24817707-24818206 Arabidopsis thaliana
AT5G61770 1.0kb upstream 1.0kb upstream 3099 true Chr5: 24814608-24817706 Arabidopsis thaliana
AT5G61770 1.0kb upstream 1.0kb upstream 1000 false Chr5: 24814608-24815607 Arabidopsis thaliana
AT5G61770 1.0kb downstream 1.0kb downstream 3099 true Chr5: 24815608-24818706 Arabidopsis thaliana
AT5G61770 1.0kb downstream 1.0kb downstream 1000 false Chr5: 24817707-24818706 Arabidopsis thaliana
AT5G61770 2.0kb upstream 2.0kb upstream 4099 true Chr5: 24813608-24817706 Arabidopsis thaliana
AT5G61770 2.0kb upstream 2.0kb upstream 2000 false Chr5: 24813608-24815607 Arabidopsis thaliana
AT5G61770 2.0kb downstream 2.0kb downstream 4099 true Chr5: 24815608-24819706 Arabidopsis thaliana
AT5G61770 2.0kb downstream 2.0kb downstream 2000 false Chr5: 24817707-24819706 Arabidopsis thaliana
AT5G61770 5.0kb upstream 5.0kb upstream 7099 true Chr5: 24810608-24817706 Arabidopsis thaliana
AT5G61770 5.0kb upstream 5.0kb upstream 5000 false Chr5: 24810608-24815607 Arabidopsis thaliana
AT5G61770 5.0kb downstream 5.0kb downstream 7099 true Chr5: 24815608-24822706 Arabidopsis thaliana
AT5G61770 5.0kb downstream 5.0kb downstream 5000 false Chr5: 24817707-24822706 Arabidopsis thaliana
AT5G61770 10.0kb upstream 10.0kb upstream 12099 true Chr5: 24805608-24817706 Arabidopsis thaliana
AT5G61770 10.0kb upstream 10.0kb upstream 10000 false Chr5: 24805608-24815607 Arabidopsis thaliana
AT5G61770 10.0kb downstream 10.0kb downstream 12099 true Chr5: 24815608-24827706 Arabidopsis thaliana
AT5G61770 10.0kb downstream 10.0kb downstream 10000 false Chr5: 24817707-24827706 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372004 5261 Brassicaceae View MSA
123831748 5264 Brassicales-Malvales View MSA
124343252 5266 SBM View MSA
124238748 5268 Malvidae View MSA
124061077 5270 Rosid View MSA
123744478 5271 Pentapetalae View MSA
122786506 5272 Eudicot View MSA
122044667 5273 Angiosperm View MSA
121349630 5274 Embryophyte View MSA
123424423 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.854        
cufflinks 4.007        
cufflinks 2.548        
cufflinks 4.561        
cufflinks 2.162       Low
cufflinks 5.022       High

0 Strain