Gene : Tudor2 A. thaliana TAIR10
Primary Identifier:  ? AT5G61780 Defline:  (1 of 2) K15979 - staphylococcal nuclease domain-containing protein 1 (SND1)
Genomic Order:  5684 Name:  ? AT5G61780
Secondary Identifier:  ? PAC:19671847
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0 Pathways

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G61780 0.5kb upstream 0.5kb upstream 6212 true Chr5: 24820758-24826969 Arabidopsis thaliana
AT5G61780 0.5kb upstream 0.5kb upstream 500 false Chr5: 24820758-24821257 Arabidopsis thaliana
AT5G61780 0.5kb downstream 0.5kb downstream 6212 true Chr5: 24821258-24827469 Arabidopsis thaliana
AT5G61780 0.5kb downstream 0.5kb downstream 500 false Chr5: 24826970-24827469 Arabidopsis thaliana
AT5G61780 1.0kb upstream 1.0kb upstream 6712 true Chr5: 24820258-24826969 Arabidopsis thaliana
AT5G61780 1.0kb upstream 1.0kb upstream 1000 false Chr5: 24820258-24821257 Arabidopsis thaliana
AT5G61780 1.0kb downstream 1.0kb downstream 6712 true Chr5: 24821258-24827969 Arabidopsis thaliana
AT5G61780 1.0kb downstream 1.0kb downstream 1000 false Chr5: 24826970-24827969 Arabidopsis thaliana
AT5G61780 2.0kb upstream 2.0kb upstream 7712 true Chr5: 24819258-24826969 Arabidopsis thaliana
AT5G61780 2.0kb upstream 2.0kb upstream 2000 false Chr5: 24819258-24821257 Arabidopsis thaliana
AT5G61780 2.0kb downstream 2.0kb downstream 7712 true Chr5: 24821258-24828969 Arabidopsis thaliana
AT5G61780 2.0kb downstream 2.0kb downstream 2000 false Chr5: 24826970-24828969 Arabidopsis thaliana
AT5G61780 5.0kb upstream 5.0kb upstream 10712 true Chr5: 24816258-24826969 Arabidopsis thaliana
AT5G61780 5.0kb upstream 5.0kb upstream 5000 false Chr5: 24816258-24821257 Arabidopsis thaliana
AT5G61780 5.0kb downstream 5.0kb downstream 10712 true Chr5: 24821258-24831969 Arabidopsis thaliana
AT5G61780 5.0kb downstream 5.0kb downstream 5000 false Chr5: 24826970-24831969 Arabidopsis thaliana
AT5G61780 10.0kb upstream 10.0kb upstream 15712 true Chr5: 24811258-24826969 Arabidopsis thaliana
AT5G61780 10.0kb upstream 10.0kb upstream 10000 false Chr5: 24811258-24821257 Arabidopsis thaliana
AT5G61780 10.0kb downstream 10.0kb downstream 15712 true Chr5: 24821258-24836969 Arabidopsis thaliana
AT5G61780 10.0kb downstream 10.0kb downstream 10000 false Chr5: 24826970-24836969 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368287 5261 Brassicaceae View MSA
123833003 5264 Brassicales-Malvales View MSA
124345847 5266 SBM View MSA
124253737 5268 Malvidae View MSA
124063512 5270 Rosid View MSA
123750143 5271 Pentapetalae View MSA
122792240 5272 Eudicot View MSA
122045842 5273 Angiosperm View MSA
121344100 5274 Embryophyte View MSA
123426864 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.712        
cufflinks 33.341     High  
cufflinks 19.968        
cufflinks 39.308     High  
cufflinks 20.217        
cufflinks 47.013     High High

0 Strain