Gene : AT5G64580 A. thaliana TAIR10
Defline:  (1 of 1) PTHR23076//PTHR23076:SF49 - METALLOPROTEASE M41 FTSH // AAA-TYPE ATPASE FAMILY PROTEIN Genomic Order:  5981
Name:  ? AT5G64580 Secondary Identifier:  ? PAC:19670148
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G64580 0.5kb upstream 0.5kb upstream 4939 true Chr5: 25817092-25822030 Arabidopsis thaliana
AT5G64580 0.5kb upstream 0.5kb upstream 500 false Chr5: 25821531-25822030 Arabidopsis thaliana
AT5G64580 0.5kb downstream 0.5kb downstream 4939 true Chr5: 25816592-25821530 Arabidopsis thaliana
AT5G64580 0.5kb downstream 0.5kb downstream 500 false Chr5: 25816592-25817091 Arabidopsis thaliana
AT5G64580 1.0kb upstream 1.0kb upstream 5439 true Chr5: 25817092-25822530 Arabidopsis thaliana
AT5G64580 1.0kb upstream 1.0kb upstream 1000 false Chr5: 25821531-25822530 Arabidopsis thaliana
AT5G64580 1.0kb downstream 1.0kb downstream 5439 true Chr5: 25816092-25821530 Arabidopsis thaliana
AT5G64580 1.0kb downstream 1.0kb downstream 1000 false Chr5: 25816092-25817091 Arabidopsis thaliana
AT5G64580 2.0kb upstream 2.0kb upstream 6439 true Chr5: 25817092-25823530 Arabidopsis thaliana
AT5G64580 2.0kb upstream 2.0kb upstream 2000 false Chr5: 25821531-25823530 Arabidopsis thaliana
AT5G64580 2.0kb downstream 2.0kb downstream 6439 true Chr5: 25815092-25821530 Arabidopsis thaliana
AT5G64580 2.0kb downstream 2.0kb downstream 2000 false Chr5: 25815092-25817091 Arabidopsis thaliana
AT5G64580 5.0kb upstream 5.0kb upstream 9439 true Chr5: 25817092-25826530 Arabidopsis thaliana
AT5G64580 5.0kb upstream 5.0kb upstream 5000 false Chr5: 25821531-25826530 Arabidopsis thaliana
AT5G64580 5.0kb downstream 5.0kb downstream 9439 true Chr5: 25812092-25821530 Arabidopsis thaliana
AT5G64580 5.0kb downstream 5.0kb downstream 5000 false Chr5: 25812092-25817091 Arabidopsis thaliana
AT5G64580 10.0kb upstream 10.0kb upstream 14439 true Chr5: 25817092-25831530 Arabidopsis thaliana
AT5G64580 10.0kb upstream 10.0kb upstream 10000 false Chr5: 25821531-25831530 Arabidopsis thaliana
AT5G64580 10.0kb downstream 10.0kb downstream 14439 true Chr5: 25807092-25821530 Arabidopsis thaliana
AT5G64580 10.0kb downstream 10.0kb downstream 10000 false Chr5: 25807092-25817091 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361326 5261 Brassicaceae View MSA
123829147 5264 Brassicales-Malvales View MSA
124340816 5266 SBM View MSA
124240643 5268 Malvidae View MSA
124066007 5270 Rosid View MSA
123738416 5271 Pentapetalae View MSA
122790727 5272 Eudicot View MSA
122043853 5273 Angiosperm View MSA
121345104 5274 Embryophyte View MSA
123380156 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.081       High
cufflinks 4.367       Low
cufflinks 18.544       High
cufflinks 4.922        
cufflinks 13.545        
cufflinks 5.065        

0 Strain