Gene : NPH3 A. thaliana TAIR10
Primary Identifier:  ? AT5G64330 Defline:  (1 of 1) PTHR32370:SF6 - ROOT PHOTOTROPISM PROTEIN 3
Genomic Order:  5949 Name:  ? AT5G64330
Secondary Identifier:  ? PAC:19671982
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G64330 0.5kb upstream 0.5kb upstream 3525 true Chr5: 25726837-25730361 Arabidopsis thaliana
AT5G64330 0.5kb upstream 0.5kb upstream 500 false Chr5: 25726837-25727336 Arabidopsis thaliana
AT5G64330 0.5kb downstream 0.5kb downstream 3525 true Chr5: 25727337-25730861 Arabidopsis thaliana
AT5G64330 0.5kb downstream 0.5kb downstream 500 false Chr5: 25730362-25730861 Arabidopsis thaliana
AT5G64330 1.0kb upstream 1.0kb upstream 4025 true Chr5: 25726337-25730361 Arabidopsis thaliana
AT5G64330 1.0kb upstream 1.0kb upstream 1000 false Chr5: 25726337-25727336 Arabidopsis thaliana
AT5G64330 1.0kb downstream 1.0kb downstream 4025 true Chr5: 25727337-25731361 Arabidopsis thaliana
AT5G64330 1.0kb downstream 1.0kb downstream 1000 false Chr5: 25730362-25731361 Arabidopsis thaliana
AT5G64330 2.0kb upstream 2.0kb upstream 5025 true Chr5: 25725337-25730361 Arabidopsis thaliana
AT5G64330 2.0kb upstream 2.0kb upstream 2000 false Chr5: 25725337-25727336 Arabidopsis thaliana
AT5G64330 2.0kb downstream 2.0kb downstream 5025 true Chr5: 25727337-25732361 Arabidopsis thaliana
AT5G64330 2.0kb downstream 2.0kb downstream 2000 false Chr5: 25730362-25732361 Arabidopsis thaliana
AT5G64330 5.0kb upstream 5.0kb upstream 8025 true Chr5: 25722337-25730361 Arabidopsis thaliana
AT5G64330 5.0kb upstream 5.0kb upstream 5000 false Chr5: 25722337-25727336 Arabidopsis thaliana
AT5G64330 5.0kb downstream 5.0kb downstream 8025 true Chr5: 25727337-25735361 Arabidopsis thaliana
AT5G64330 5.0kb downstream 5.0kb downstream 5000 false Chr5: 25730362-25735361 Arabidopsis thaliana
AT5G64330 10.0kb upstream 10.0kb upstream 13025 true Chr5: 25717337-25730361 Arabidopsis thaliana
AT5G64330 10.0kb upstream 10.0kb upstream 10000 false Chr5: 25717337-25727336 Arabidopsis thaliana
AT5G64330 10.0kb downstream 10.0kb downstream 13025 true Chr5: 25727337-25740361 Arabidopsis thaliana
AT5G64330 10.0kb downstream 10.0kb downstream 10000 false Chr5: 25730362-25740361 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362053 5261 Brassicaceae View MSA
123832036 5264 Brassicales-Malvales View MSA
124338450 5266 SBM View MSA
124247205 5268 Malvidae View MSA
124063481 5270 Rosid View MSA
123746549 5271 Pentapetalae View MSA
122794613 5272 Eudicot View MSA
122049761 5273 Angiosperm View MSA
121347435 5274 Embryophyte View MSA
123380549 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.365        
cufflinks 2.039        
cufflinks 6.451        
cufflinks 1.95       Low
cufflinks 7.1        
cufflinks 2.383        

0 Strain