Gene : PDF2.5 A. thaliana TAIR10
Primary Identifier:  ? AT5G63660 Defline:  (1 of 1) PTHR33147//PTHR33147:SF3 - FAMILY NOT NAMED // DEFENSIN-LIKE PROTEIN 6
Genomic Order:  5880 Name:  ? AT5G63660
Secondary Identifier:  ? PAC:19666155
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G63660 0.5kb upstream 0.5kb upstream 871 true Chr5: 25485192-25486062 Arabidopsis thaliana
AT5G63660 0.5kb upstream 0.5kb upstream 500 false Chr5: 25485192-25485691 Arabidopsis thaliana
AT5G63660 0.5kb downstream 0.5kb downstream 871 true Chr5: 25485692-25486562 Arabidopsis thaliana
AT5G63660 0.5kb downstream 0.5kb downstream 500 false Chr5: 25486063-25486562 Arabidopsis thaliana
AT5G63660 1.0kb upstream 1.0kb upstream 1371 true Chr5: 25484692-25486062 Arabidopsis thaliana
AT5G63660 1.0kb upstream 1.0kb upstream 1000 false Chr5: 25484692-25485691 Arabidopsis thaliana
AT5G63660 1.0kb downstream 1.0kb downstream 1371 true Chr5: 25485692-25487062 Arabidopsis thaliana
AT5G63660 1.0kb downstream 1.0kb downstream 1000 false Chr5: 25486063-25487062 Arabidopsis thaliana
AT5G63660 2.0kb upstream 2.0kb upstream 2371 true Chr5: 25483692-25486062 Arabidopsis thaliana
AT5G63660 2.0kb upstream 2.0kb upstream 2000 false Chr5: 25483692-25485691 Arabidopsis thaliana
AT5G63660 2.0kb downstream 2.0kb downstream 2371 true Chr5: 25485692-25488062 Arabidopsis thaliana
AT5G63660 2.0kb downstream 2.0kb downstream 2000 false Chr5: 25486063-25488062 Arabidopsis thaliana
AT5G63660 5.0kb upstream 5.0kb upstream 5371 true Chr5: 25480692-25486062 Arabidopsis thaliana
AT5G63660 5.0kb upstream 5.0kb upstream 5000 false Chr5: 25480692-25485691 Arabidopsis thaliana
AT5G63660 5.0kb downstream 5.0kb downstream 5371 true Chr5: 25485692-25491062 Arabidopsis thaliana
AT5G63660 5.0kb downstream 5.0kb downstream 5000 false Chr5: 25486063-25491062 Arabidopsis thaliana
AT5G63660 10.0kb upstream 10.0kb upstream 10371 true Chr5: 25475692-25486062 Arabidopsis thaliana
AT5G63660 10.0kb upstream 10.0kb upstream 10000 false Chr5: 25475692-25485691 Arabidopsis thaliana
AT5G63660 10.0kb downstream 10.0kb downstream 10371 true Chr5: 25485692-25496062 Arabidopsis thaliana
AT5G63660 10.0kb downstream 10.0kb downstream 10000 false Chr5: 25486063-25496062 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029096 5273 Angiosperm View MSA
122360942 5261 Brassicaceae View MSA
123839265 5264 Brassicales-Malvales View MSA
124344751 5266 SBM View MSA
124245250 5268 Malvidae View MSA
124066423 5270 Rosid View MSA
123752741 5271 Pentapetalae View MSA
122796765 5272 Eudicot View MSA
121298492 5274 Embryophyte View MSA
123336463 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.16     Low  
cufflinks 6.259        
cufflinks 0.039     Low Low
cufflinks 9.335        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 14.465        

0 Strain