Gene : LOB A. thaliana TAIR10
Primary Identifier:  ? AT5G63090 Defline:  (1 of 1) PTHR31301:SF25 - PROTEIN LATERAL ORGAN BOUNDARIES
Genomic Order:  5823 Name:  ? AT5G63090
Secondary Identifier:  ? PAC:19671559
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G63090 0.5kb upstream 0.5kb upstream 2902 true Chr5: 25308572-25311473 Arabidopsis thaliana
AT5G63090 0.5kb upstream 0.5kb upstream 500 false Chr5: 25310974-25311473 Arabidopsis thaliana
AT5G63090 0.5kb downstream 0.5kb downstream 2902 true Chr5: 25308072-25310973 Arabidopsis thaliana
AT5G63090 0.5kb downstream 0.5kb downstream 500 false Chr5: 25308072-25308571 Arabidopsis thaliana
AT5G63090 1.0kb upstream 1.0kb upstream 3402 true Chr5: 25308572-25311973 Arabidopsis thaliana
AT5G63090 1.0kb upstream 1.0kb upstream 1000 false Chr5: 25310974-25311973 Arabidopsis thaliana
AT5G63090 1.0kb downstream 1.0kb downstream 3402 true Chr5: 25307572-25310973 Arabidopsis thaliana
AT5G63090 1.0kb downstream 1.0kb downstream 1000 false Chr5: 25307572-25308571 Arabidopsis thaliana
AT5G63090 2.0kb upstream 2.0kb upstream 4402 true Chr5: 25308572-25312973 Arabidopsis thaliana
AT5G63090 2.0kb upstream 2.0kb upstream 2000 false Chr5: 25310974-25312973 Arabidopsis thaliana
AT5G63090 2.0kb downstream 2.0kb downstream 4402 true Chr5: 25306572-25310973 Arabidopsis thaliana
AT5G63090 2.0kb downstream 2.0kb downstream 2000 false Chr5: 25306572-25308571 Arabidopsis thaliana
AT5G63090 5.0kb upstream 5.0kb upstream 7402 true Chr5: 25308572-25315973 Arabidopsis thaliana
AT5G63090 5.0kb upstream 5.0kb upstream 5000 false Chr5: 25310974-25315973 Arabidopsis thaliana
AT5G63090 5.0kb downstream 5.0kb downstream 7402 true Chr5: 25303572-25310973 Arabidopsis thaliana
AT5G63090 5.0kb downstream 5.0kb downstream 5000 false Chr5: 25303572-25308571 Arabidopsis thaliana
AT5G63090 10.0kb upstream 10.0kb upstream 12402 true Chr5: 25308572-25320973 Arabidopsis thaliana
AT5G63090 10.0kb upstream 10.0kb upstream 10000 false Chr5: 25310974-25320973 Arabidopsis thaliana
AT5G63090 10.0kb downstream 10.0kb downstream 12402 true Chr5: 25298572-25310973 Arabidopsis thaliana
AT5G63090 10.0kb downstream 10.0kb downstream 10000 false Chr5: 25298572-25308571 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369781 5261 Brassicaceae View MSA
123834079 5264 Brassicales-Malvales View MSA
124337839 5266 SBM View MSA
124250779 5268 Malvidae View MSA
124070294 5270 Rosid View MSA
123752210 5271 Pentapetalae View MSA
122796223 5272 Eudicot View MSA
122048133 5273 Angiosperm View MSA
121350574 5274 Embryophyte View MSA
123381803 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.112     Low  
cufflinks 0.408       High
cufflinks 0.051     Low Low
cufflinks 0.305     Low  
cufflinks 0.107     Low  
cufflinks 0.277     Low  

0 Strain