Gene : AT5G65490 A. thaliana TAIR10
Defline:  (1 of 1) PTHR13060 - SGT1 PROTEIN HSGT1 SUPPRESSOR OF GCR2 Genomic Order:  6081
Name:  ? AT5G65490 Secondary Identifier:  ? PAC:19671540
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G65490 0.5kb upstream 0.5kb upstream 3017 true Chr5: 26177800-26180816 Arabidopsis thaliana
AT5G65490 0.5kb upstream 0.5kb upstream 500 false Chr5: 26180317-26180816 Arabidopsis thaliana
AT5G65490 0.5kb downstream 0.5kb downstream 3017 true Chr5: 26177300-26180316 Arabidopsis thaliana
AT5G65490 0.5kb downstream 0.5kb downstream 500 false Chr5: 26177300-26177799 Arabidopsis thaliana
AT5G65490 1.0kb upstream 1.0kb upstream 3517 true Chr5: 26177800-26181316 Arabidopsis thaliana
AT5G65490 1.0kb upstream 1.0kb upstream 1000 false Chr5: 26180317-26181316 Arabidopsis thaliana
AT5G65490 1.0kb downstream 1.0kb downstream 3517 true Chr5: 26176800-26180316 Arabidopsis thaliana
AT5G65490 1.0kb downstream 1.0kb downstream 1000 false Chr5: 26176800-26177799 Arabidopsis thaliana
AT5G65490 2.0kb upstream 2.0kb upstream 4517 true Chr5: 26177800-26182316 Arabidopsis thaliana
AT5G65490 2.0kb upstream 2.0kb upstream 2000 false Chr5: 26180317-26182316 Arabidopsis thaliana
AT5G65490 2.0kb downstream 2.0kb downstream 4517 true Chr5: 26175800-26180316 Arabidopsis thaliana
AT5G65490 2.0kb downstream 2.0kb downstream 2000 false Chr5: 26175800-26177799 Arabidopsis thaliana
AT5G65490 5.0kb upstream 5.0kb upstream 7517 true Chr5: 26177800-26185316 Arabidopsis thaliana
AT5G65490 5.0kb upstream 5.0kb upstream 5000 false Chr5: 26180317-26185316 Arabidopsis thaliana
AT5G65490 5.0kb downstream 5.0kb downstream 7517 true Chr5: 26172800-26180316 Arabidopsis thaliana
AT5G65490 5.0kb downstream 5.0kb downstream 5000 false Chr5: 26172800-26177799 Arabidopsis thaliana
AT5G65490 10.0kb upstream 10.0kb upstream 12517 true Chr5: 26177800-26190316 Arabidopsis thaliana
AT5G65490 10.0kb upstream 10.0kb upstream 10000 false Chr5: 26180317-26190316 Arabidopsis thaliana
AT5G65490 10.0kb downstream 10.0kb downstream 12517 true Chr5: 26167800-26180316 Arabidopsis thaliana
AT5G65490 10.0kb downstream 10.0kb downstream 10000 false Chr5: 26167800-26177799 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370237 5261 Brassicaceae View MSA
123828739 5264 Brassicales-Malvales View MSA
124337265 5266 SBM View MSA
124242893 5268 Malvidae View MSA
124072194 5270 Rosid View MSA
123740362 5271 Pentapetalae View MSA
122792261 5272 Eudicot View MSA
122046439 5273 Angiosperm View MSA
121348661 5274 Embryophyte View MSA
123424797 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.849        
cufflinks 9.634        
cufflinks 7.598        
cufflinks 10.895       High
cufflinks 6.623       Low
cufflinks 9.789        

0 Strain