Gene : AT5G65500 A. thaliana TAIR10
Defline:  (1 of 1) PTHR27003:SF81 - U-BOX DOMAIN-CONTAINING PROTEIN 50-RELATED Genomic Order:  6083
Name:  ? AT5G65500 Secondary Identifier:  ? PAC:19667725
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G65500 0.5kb upstream 0.5kb upstream 3405 true Chr5: 26181093-26184497 Arabidopsis thaliana
AT5G65500 0.5kb upstream 0.5kb upstream 500 false Chr5: 26183998-26184497 Arabidopsis thaliana
AT5G65500 0.5kb downstream 0.5kb downstream 3405 true Chr5: 26180593-26183997 Arabidopsis thaliana
AT5G65500 0.5kb downstream 0.5kb downstream 500 false Chr5: 26180593-26181092 Arabidopsis thaliana
AT5G65500 1.0kb upstream 1.0kb upstream 3905 true Chr5: 26181093-26184997 Arabidopsis thaliana
AT5G65500 1.0kb upstream 1.0kb upstream 1000 false Chr5: 26183998-26184997 Arabidopsis thaliana
AT5G65500 1.0kb downstream 1.0kb downstream 3905 true Chr5: 26180093-26183997 Arabidopsis thaliana
AT5G65500 1.0kb downstream 1.0kb downstream 1000 false Chr5: 26180093-26181092 Arabidopsis thaliana
AT5G65500 2.0kb upstream 2.0kb upstream 4905 true Chr5: 26181093-26185997 Arabidopsis thaliana
AT5G65500 2.0kb upstream 2.0kb upstream 2000 false Chr5: 26183998-26185997 Arabidopsis thaliana
AT5G65500 2.0kb downstream 2.0kb downstream 4905 true Chr5: 26179093-26183997 Arabidopsis thaliana
AT5G65500 2.0kb downstream 2.0kb downstream 2000 false Chr5: 26179093-26181092 Arabidopsis thaliana
AT5G65500 5.0kb upstream 5.0kb upstream 7905 true Chr5: 26181093-26188997 Arabidopsis thaliana
AT5G65500 5.0kb upstream 5.0kb upstream 5000 false Chr5: 26183998-26188997 Arabidopsis thaliana
AT5G65500 5.0kb downstream 5.0kb downstream 7905 true Chr5: 26176093-26183997 Arabidopsis thaliana
AT5G65500 5.0kb downstream 5.0kb downstream 5000 false Chr5: 26176093-26181092 Arabidopsis thaliana
AT5G65500 10.0kb upstream 10.0kb upstream 12905 true Chr5: 26181093-26193997 Arabidopsis thaliana
AT5G65500 10.0kb upstream 10.0kb upstream 10000 false Chr5: 26183998-26193997 Arabidopsis thaliana
AT5G65500 10.0kb downstream 10.0kb downstream 12905 true Chr5: 26171093-26183997 Arabidopsis thaliana
AT5G65500 10.0kb downstream 10.0kb downstream 10000 false Chr5: 26171093-26181092 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363314 5261 Brassicaceae View MSA
123827517 5264 Brassicales-Malvales View MSA
124342934 5266 SBM View MSA
124244198 5268 Malvidae View MSA
124071165 5270 Rosid View MSA
123753765 5271 Pentapetalae View MSA
122797900 5272 Eudicot View MSA
122051692 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.165     Low  
cufflinks 0.442        
cufflinks 0.038     Low Low
cufflinks 1.195       High
cufflinks 0.111     Low  
cufflinks 0.258     Low  

0 Strain