Gene : UBP17 A. thaliana TAIR10
Primary Identifier:  ? AT5G65450 Defline:  (1 of 9) K11855 - ubiquitin carboxyl-terminal hydrolase 36/42 [EC:3.4.19.12] (USP36_42)
Genomic Order:  6077 Name:  ? AT5G65450
Secondary Identifier:  ? PAC:19668784
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0 Pathways

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G65450 0.5kb upstream 0.5kb upstream 3734 true Chr5: 26157363-26161096 Arabidopsis thaliana
AT5G65450 0.5kb upstream 0.5kb upstream 500 false Chr5: 26157363-26157862 Arabidopsis thaliana
AT5G65450 0.5kb downstream 0.5kb downstream 3734 true Chr5: 26157863-26161596 Arabidopsis thaliana
AT5G65450 0.5kb downstream 0.5kb downstream 500 false Chr5: 26161097-26161596 Arabidopsis thaliana
AT5G65450 1.0kb upstream 1.0kb upstream 4234 true Chr5: 26156863-26161096 Arabidopsis thaliana
AT5G65450 1.0kb upstream 1.0kb upstream 1000 false Chr5: 26156863-26157862 Arabidopsis thaliana
AT5G65450 1.0kb downstream 1.0kb downstream 4234 true Chr5: 26157863-26162096 Arabidopsis thaliana
AT5G65450 1.0kb downstream 1.0kb downstream 1000 false Chr5: 26161097-26162096 Arabidopsis thaliana
AT5G65450 2.0kb upstream 2.0kb upstream 5234 true Chr5: 26155863-26161096 Arabidopsis thaliana
AT5G65450 2.0kb upstream 2.0kb upstream 2000 false Chr5: 26155863-26157862 Arabidopsis thaliana
AT5G65450 2.0kb downstream 2.0kb downstream 5234 true Chr5: 26157863-26163096 Arabidopsis thaliana
AT5G65450 2.0kb downstream 2.0kb downstream 2000 false Chr5: 26161097-26163096 Arabidopsis thaliana
AT5G65450 5.0kb upstream 5.0kb upstream 8234 true Chr5: 26152863-26161096 Arabidopsis thaliana
AT5G65450 5.0kb upstream 5.0kb upstream 5000 false Chr5: 26152863-26157862 Arabidopsis thaliana
AT5G65450 5.0kb downstream 5.0kb downstream 8234 true Chr5: 26157863-26166096 Arabidopsis thaliana
AT5G65450 5.0kb downstream 5.0kb downstream 5000 false Chr5: 26161097-26166096 Arabidopsis thaliana
AT5G65450 10.0kb upstream 10.0kb upstream 13234 true Chr5: 26147863-26161096 Arabidopsis thaliana
AT5G65450 10.0kb upstream 10.0kb upstream 10000 false Chr5: 26147863-26157862 Arabidopsis thaliana
AT5G65450 10.0kb downstream 10.0kb downstream 13234 true Chr5: 26157863-26171096 Arabidopsis thaliana
AT5G65450 10.0kb downstream 10.0kb downstream 10000 false Chr5: 26161097-26171096 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367749 5261 Brassicaceae View MSA
123836767 5264 Brassicales-Malvales View MSA
124341786 5266 SBM View MSA
124244501 5268 Malvidae View MSA
124074060 5270 Rosid View MSA
123744401 5271 Pentapetalae View MSA
122795716 5272 Eudicot View MSA
122046939 5273 Angiosperm View MSA
121350818 5274 Embryophyte View MSA
123428412 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.059        
cufflinks 3.74       High
cufflinks 1.367       Low
cufflinks 3.447        
cufflinks 1.594        
cufflinks 3.295        

0 Strain