Gene : AT5G65180 A. thaliana TAIR10
Defline:  (1 of 3) K15559 - regulator of Ty1 transposition protein 103 (RTT103) Genomic Order:  6048
Name:  ? AT5G65180 Secondary Identifier:  ? PAC:19667722
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G65180 0.5kb upstream 0.5kb upstream 3171 true Chr5: 26044861-26048031 Arabidopsis thaliana
AT5G65180 0.5kb upstream 0.5kb upstream 500 false Chr5: 26044861-26045360 Arabidopsis thaliana
AT5G65180 0.5kb downstream 0.5kb downstream 3171 true Chr5: 26045361-26048531 Arabidopsis thaliana
AT5G65180 0.5kb downstream 0.5kb downstream 500 false Chr5: 26048032-26048531 Arabidopsis thaliana
AT5G65180 1.0kb upstream 1.0kb upstream 3671 true Chr5: 26044361-26048031 Arabidopsis thaliana
AT5G65180 1.0kb upstream 1.0kb upstream 1000 false Chr5: 26044361-26045360 Arabidopsis thaliana
AT5G65180 1.0kb downstream 1.0kb downstream 3671 true Chr5: 26045361-26049031 Arabidopsis thaliana
AT5G65180 1.0kb downstream 1.0kb downstream 1000 false Chr5: 26048032-26049031 Arabidopsis thaliana
AT5G65180 2.0kb upstream 2.0kb upstream 4671 true Chr5: 26043361-26048031 Arabidopsis thaliana
AT5G65180 2.0kb upstream 2.0kb upstream 2000 false Chr5: 26043361-26045360 Arabidopsis thaliana
AT5G65180 2.0kb downstream 2.0kb downstream 4671 true Chr5: 26045361-26050031 Arabidopsis thaliana
AT5G65180 2.0kb downstream 2.0kb downstream 2000 false Chr5: 26048032-26050031 Arabidopsis thaliana
AT5G65180 5.0kb upstream 5.0kb upstream 7671 true Chr5: 26040361-26048031 Arabidopsis thaliana
AT5G65180 5.0kb upstream 5.0kb upstream 5000 false Chr5: 26040361-26045360 Arabidopsis thaliana
AT5G65180 5.0kb downstream 5.0kb downstream 7671 true Chr5: 26045361-26053031 Arabidopsis thaliana
AT5G65180 5.0kb downstream 5.0kb downstream 5000 false Chr5: 26048032-26053031 Arabidopsis thaliana
AT5G65180 10.0kb upstream 10.0kb upstream 12671 true Chr5: 26035361-26048031 Arabidopsis thaliana
AT5G65180 10.0kb upstream 10.0kb upstream 10000 false Chr5: 26035361-26045360 Arabidopsis thaliana
AT5G65180 10.0kb downstream 10.0kb downstream 12671 true Chr5: 26045361-26058031 Arabidopsis thaliana
AT5G65180 10.0kb downstream 10.0kb downstream 10000 false Chr5: 26048032-26058031 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376273 5261 Brassicaceae View MSA
123840153 5264 Brassicales-Malvales View MSA
124344204 5266 SBM View MSA
124251987 5268 Malvidae View MSA
124070749 5270 Rosid View MSA
123742286 5271 Pentapetalae View MSA
122795416 5272 Eudicot View MSA
122049571 5273 Angiosperm View MSA
123428880 5275 Viridiplantae View MSA
121348039 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.545        
cufflinks 3.667        
cufflinks 2.001       Low
cufflinks 3.724        
cufflinks 2.053       Low
cufflinks 3.749        

0 Strain