Gene : ATCG00580 A. thaliana TAIR10
Defline:  (1 of 1) K02707 - photosystem II cytochrome b559 subunit alpha (psbE) Genomic Order:  38
Name:  ? ATCG00580 Secondary Identifier:  ? PAC:19637986
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
ATCG00580 0.5kb upstream 0.5kb upstream 752 true ChrC: 64071-64822 Arabidopsis thaliana
ATCG00580 0.5kb upstream 0.5kb upstream 500 false ChrC: 64323-64822 Arabidopsis thaliana
ATCG00580 0.5kb downstream 0.5kb downstream 752 true ChrC: 63571-64322 Arabidopsis thaliana
ATCG00580 0.5kb downstream 0.5kb downstream 500 false ChrC: 63571-64070 Arabidopsis thaliana
ATCG00580 1.0kb upstream 1.0kb upstream 1252 true ChrC: 64071-65322 Arabidopsis thaliana
ATCG00580 1.0kb upstream 1.0kb upstream 1000 false ChrC: 64323-65322 Arabidopsis thaliana
ATCG00580 1.0kb downstream 1.0kb downstream 1252 true ChrC: 63071-64322 Arabidopsis thaliana
ATCG00580 1.0kb downstream 1.0kb downstream 1000 false ChrC: 63071-64070 Arabidopsis thaliana
ATCG00580 2.0kb upstream 2.0kb upstream 2252 true ChrC: 64071-66322 Arabidopsis thaliana
ATCG00580 2.0kb upstream 2.0kb upstream 2000 false ChrC: 64323-66322 Arabidopsis thaliana
ATCG00580 2.0kb downstream 2.0kb downstream 2252 true ChrC: 62071-64322 Arabidopsis thaliana
ATCG00580 2.0kb downstream 2.0kb downstream 2000 false ChrC: 62071-64070 Arabidopsis thaliana
ATCG00580 5.0kb upstream 5.0kb upstream 5252 true ChrC: 64071-69322 Arabidopsis thaliana
ATCG00580 5.0kb upstream 5.0kb upstream 5000 false ChrC: 64323-69322 Arabidopsis thaliana
ATCG00580 5.0kb downstream 5.0kb downstream 5252 true ChrC: 59071-64322 Arabidopsis thaliana
ATCG00580 5.0kb downstream 5.0kb downstream 5000 false ChrC: 59071-64070 Arabidopsis thaliana
ATCG00580 10.0kb upstream 10.0kb upstream 10252 true ChrC: 64071-74322 Arabidopsis thaliana
ATCG00580 10.0kb upstream 10.0kb upstream 10000 false ChrC: 64323-74322 Arabidopsis thaliana
ATCG00580 10.0kb downstream 10.0kb downstream 10252 true ChrC: 54071-64322 Arabidopsis thaliana
ATCG00580 10.0kb downstream 10.0kb downstream 10000 false ChrC: 54071-64070 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027002 5273 Angiosperm View MSA
122376569 5261 Brassicaceae View MSA
123839085 5264 Brassicales-Malvales View MSA
124322550 5266 SBM View MSA
124248112 5268 Malvidae View MSA
124050140 5270 Rosid View MSA
123750907 5271 Pentapetalae View MSA
122797055 5272 Eudicot View MSA
121296728 5274 Embryophyte View MSA
123424436 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.682        
cufflinks 1.264        
cufflinks 38.77     High High
cufflinks 0.868       Low
cufflinks 9.191        
cufflinks 2.218        

0 Strain