Gene : ATCG00790 A. thaliana TAIR10
Defline:  (1 of 1) PTHR12220//PTHR12220:SF14 - 50S/60S RIBOSOMAL PROTEIN L16 // SUBFAMILY NOT NAMED Genomic Order:  58
Name:  ? ATCG00790 Secondary Identifier:  ? PAC:19638020
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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
ATCG00790 0.5kb upstream 0.5kb upstream 1964 true ChrC: 81189-83152 Arabidopsis thaliana
ATCG00790 0.5kb upstream 0.5kb upstream 500 false ChrC: 82653-83152 Arabidopsis thaliana
ATCG00790 0.5kb downstream 0.5kb downstream 1964 true ChrC: 80689-82652 Arabidopsis thaliana
ATCG00790 0.5kb downstream 0.5kb downstream 500 false ChrC: 80689-81188 Arabidopsis thaliana
ATCG00790 1.0kb upstream 1.0kb upstream 2464 true ChrC: 81189-83652 Arabidopsis thaliana
ATCG00790 1.0kb upstream 1.0kb upstream 1000 false ChrC: 82653-83652 Arabidopsis thaliana
ATCG00790 1.0kb downstream 1.0kb downstream 2464 true ChrC: 80189-82652 Arabidopsis thaliana
ATCG00790 1.0kb downstream 1.0kb downstream 1000 false ChrC: 80189-81188 Arabidopsis thaliana
ATCG00790 2.0kb upstream 2.0kb upstream 3464 true ChrC: 81189-84652 Arabidopsis thaliana
ATCG00790 2.0kb upstream 2.0kb upstream 2000 false ChrC: 82653-84652 Arabidopsis thaliana
ATCG00790 2.0kb downstream 2.0kb downstream 3464 true ChrC: 79189-82652 Arabidopsis thaliana
ATCG00790 2.0kb downstream 2.0kb downstream 2000 false ChrC: 79189-81188 Arabidopsis thaliana
ATCG00790 5.0kb upstream 5.0kb upstream 6464 true ChrC: 81189-87652 Arabidopsis thaliana
ATCG00790 5.0kb upstream 5.0kb upstream 5000 false ChrC: 82653-87652 Arabidopsis thaliana
ATCG00790 5.0kb downstream 5.0kb downstream 6464 true ChrC: 76189-82652 Arabidopsis thaliana
ATCG00790 5.0kb downstream 5.0kb downstream 5000 false ChrC: 76189-81188 Arabidopsis thaliana
ATCG00790 10.0kb upstream 10.0kb upstream 11464 true ChrC: 81189-92652 Arabidopsis thaliana
ATCG00790 10.0kb upstream 10.0kb upstream 10000 false ChrC: 82653-92652 Arabidopsis thaliana
ATCG00790 10.0kb downstream 10.0kb downstream 11464 true ChrC: 71189-82652 Arabidopsis thaliana
ATCG00790 10.0kb downstream 10.0kb downstream 10000 false ChrC: 71189-81188 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122332086 5261 Brassicaceae View MSA
123836327 5264 Brassicales-Malvales View MSA
124322150 5266 SBM View MSA
124246878 5268 Malvidae View MSA
124050189 5270 Rosid View MSA
123748871 5271 Pentapetalae View MSA
122796002 5272 Eudicot View MSA
122041743 5273 Angiosperm View MSA
123429161 5275 Viridiplantae View MSA
121350825 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.351        
cufflinks 1.584        
cufflinks 7.441       High
cufflinks 1.176       Low
cufflinks 2.39        
cufflinks 3.064        

0 Strain