Gene : ATCG00890 A. thaliana TAIR10
Defline:  (1 of 2) K05573 - NAD(P)H-quinone oxidoreductase subunit 2 (ndhB) Genomic Order:  66
Name:  ? ATCG00890 Secondary Identifier:  ? PAC:19637950
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-3781 Arabidopsis thaliana pathologic  
Athaliana PWY-4302 Arabidopsis thaliana pathologic  
Athaliana PWY-5083 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
ATCG00890 0.5kb upstream 0.5kb upstream 2355 true ChrC: 94941-97295 Arabidopsis thaliana
ATCG00890 0.5kb upstream 0.5kb upstream 500 false ChrC: 96796-97295 Arabidopsis thaliana
ATCG00890 0.5kb downstream 0.5kb downstream 2355 true ChrC: 94441-96795 Arabidopsis thaliana
ATCG00890 0.5kb downstream 0.5kb downstream 500 false ChrC: 94441-94940 Arabidopsis thaliana
ATCG00890 1.0kb upstream 1.0kb upstream 2855 true ChrC: 94941-97795 Arabidopsis thaliana
ATCG00890 1.0kb upstream 1.0kb upstream 1000 false ChrC: 96796-97795 Arabidopsis thaliana
ATCG00890 1.0kb downstream 1.0kb downstream 2855 true ChrC: 93941-96795 Arabidopsis thaliana
ATCG00890 1.0kb downstream 1.0kb downstream 1000 false ChrC: 93941-94940 Arabidopsis thaliana
ATCG00890 2.0kb upstream 2.0kb upstream 3855 true ChrC: 94941-98795 Arabidopsis thaliana
ATCG00890 2.0kb upstream 2.0kb upstream 2000 false ChrC: 96796-98795 Arabidopsis thaliana
ATCG00890 2.0kb downstream 2.0kb downstream 3855 true ChrC: 92941-96795 Arabidopsis thaliana
ATCG00890 2.0kb downstream 2.0kb downstream 2000 false ChrC: 92941-94940 Arabidopsis thaliana
ATCG00890 5.0kb upstream 5.0kb upstream 6855 true ChrC: 94941-101795 Arabidopsis thaliana
ATCG00890 5.0kb upstream 5.0kb upstream 5000 false ChrC: 96796-101795 Arabidopsis thaliana
ATCG00890 5.0kb downstream 5.0kb downstream 6855 true ChrC: 89941-96795 Arabidopsis thaliana
ATCG00890 5.0kb downstream 5.0kb downstream 5000 false ChrC: 89941-94940 Arabidopsis thaliana
ATCG00890 10.0kb upstream 10.0kb upstream 11855 true ChrC: 94941-106795 Arabidopsis thaliana
ATCG00890 10.0kb upstream 10.0kb upstream 10000 false ChrC: 96796-106795 Arabidopsis thaliana
ATCG00890 10.0kb downstream 10.0kb downstream 11855 true ChrC: 84941-96795 Arabidopsis thaliana
ATCG00890 10.0kb downstream 10.0kb downstream 10000 false ChrC: 84941-94940 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122332131 5261 Brassicaceae View MSA
123773239 5264 Brassicales-Malvales View MSA
124271732 5266 SBM View MSA
124249623 5268 Malvidae View MSA
124072992 5270 Rosid View MSA
123753255 5271 Pentapetalae View MSA
122797410 5272 Eudicot View MSA
122049707 5273 Angiosperm View MSA
121351606 5274 Embryophyte View MSA
123428700 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.008     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.021     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain