Gene : ATCG00270 A. thaliana TAIR10
Defline:  (1 of 1) K02706 - photosystem II P680 reaction center D2 protein (psbD) Genomic Order:  16
Name:  ? ATCG00270 Secondary Identifier:  ? PAC:19637999
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PHOTOALL-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-101 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
ATCG00270 0.5kb upstream 0.5kb upstream 1562 true ChrC: 32211-33772 Arabidopsis thaliana
ATCG00270 0.5kb upstream 0.5kb upstream 500 false ChrC: 32211-32710 Arabidopsis thaliana
ATCG00270 0.5kb downstream 0.5kb downstream 1562 true ChrC: 32711-34272 Arabidopsis thaliana
ATCG00270 0.5kb downstream 0.5kb downstream 500 false ChrC: 33773-34272 Arabidopsis thaliana
ATCG00270 1.0kb upstream 1.0kb upstream 2062 true ChrC: 31711-33772 Arabidopsis thaliana
ATCG00270 1.0kb upstream 1.0kb upstream 1000 false ChrC: 31711-32710 Arabidopsis thaliana
ATCG00270 1.0kb downstream 1.0kb downstream 2062 true ChrC: 32711-34772 Arabidopsis thaliana
ATCG00270 1.0kb downstream 1.0kb downstream 1000 false ChrC: 33773-34772 Arabidopsis thaliana
ATCG00270 2.0kb upstream 2.0kb upstream 3062 true ChrC: 30711-33772 Arabidopsis thaliana
ATCG00270 2.0kb upstream 2.0kb upstream 2000 false ChrC: 30711-32710 Arabidopsis thaliana
ATCG00270 2.0kb downstream 2.0kb downstream 3062 true ChrC: 32711-35772 Arabidopsis thaliana
ATCG00270 2.0kb downstream 2.0kb downstream 2000 false ChrC: 33773-35772 Arabidopsis thaliana
ATCG00270 5.0kb upstream 5.0kb upstream 6062 true ChrC: 27711-33772 Arabidopsis thaliana
ATCG00270 5.0kb upstream 5.0kb upstream 5000 false ChrC: 27711-32710 Arabidopsis thaliana
ATCG00270 5.0kb downstream 5.0kb downstream 6062 true ChrC: 32711-38772 Arabidopsis thaliana
ATCG00270 5.0kb downstream 5.0kb downstream 5000 false ChrC: 33773-38772 Arabidopsis thaliana
ATCG00270 10.0kb upstream 10.0kb upstream 11062 true ChrC: 22711-33772 Arabidopsis thaliana
ATCG00270 10.0kb upstream 10.0kb upstream 10000 false ChrC: 22711-32710 Arabidopsis thaliana
ATCG00270 10.0kb downstream 10.0kb downstream 11062 true ChrC: 32711-43772 Arabidopsis thaliana
ATCG00270 10.0kb downstream 10.0kb downstream 10000 false ChrC: 33773-43772 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376547 5261 Brassicaceae View MSA
123841499 5264 Brassicales-Malvales View MSA
124322948 5266 SBM View MSA
124254176 5268 Malvidae View MSA
124074858 5270 Rosid View MSA
123753555 5271 Pentapetalae View MSA
122797414 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 26.763        
cufflinks 0.588       Low
cufflinks 89.084     High High
cufflinks 0.74        
cufflinks 20.554        
cufflinks 1.917        

0 Strain