Gene : ATCG00340 A. thaliana TAIR10
Defline:  (1 of 1) PTHR30128:SF4 - PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A2 Genomic Order:  20
Name:  ? ATCG00340 Secondary Identifier:  ? PAC:19637953
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PHOTOALL-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-101 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
ATCG00340 0.5kb upstream 0.5kb upstream 2705 true ChrC: 37375-40079 Arabidopsis thaliana
ATCG00340 0.5kb upstream 0.5kb upstream 500 false ChrC: 39580-40079 Arabidopsis thaliana
ATCG00340 0.5kb downstream 0.5kb downstream 2705 true ChrC: 36875-39579 Arabidopsis thaliana
ATCG00340 0.5kb downstream 0.5kb downstream 500 false ChrC: 36875-37374 Arabidopsis thaliana
ATCG00340 1.0kb upstream 1.0kb upstream 3205 true ChrC: 37375-40579 Arabidopsis thaliana
ATCG00340 1.0kb upstream 1.0kb upstream 1000 false ChrC: 39580-40579 Arabidopsis thaliana
ATCG00340 1.0kb downstream 1.0kb downstream 3205 true ChrC: 36375-39579 Arabidopsis thaliana
ATCG00340 1.0kb downstream 1.0kb downstream 1000 false ChrC: 36375-37374 Arabidopsis thaliana
ATCG00340 2.0kb upstream 2.0kb upstream 4205 true ChrC: 37375-41579 Arabidopsis thaliana
ATCG00340 2.0kb upstream 2.0kb upstream 2000 false ChrC: 39580-41579 Arabidopsis thaliana
ATCG00340 2.0kb downstream 2.0kb downstream 4205 true ChrC: 35375-39579 Arabidopsis thaliana
ATCG00340 2.0kb downstream 2.0kb downstream 2000 false ChrC: 35375-37374 Arabidopsis thaliana
ATCG00340 5.0kb upstream 5.0kb upstream 7205 true ChrC: 37375-44579 Arabidopsis thaliana
ATCG00340 5.0kb upstream 5.0kb upstream 5000 false ChrC: 39580-44579 Arabidopsis thaliana
ATCG00340 5.0kb downstream 5.0kb downstream 7205 true ChrC: 32375-39579 Arabidopsis thaliana
ATCG00340 5.0kb downstream 5.0kb downstream 5000 false ChrC: 32375-37374 Arabidopsis thaliana
ATCG00340 10.0kb upstream 10.0kb upstream 12205 true ChrC: 37375-49579 Arabidopsis thaliana
ATCG00340 10.0kb upstream 10.0kb upstream 10000 false ChrC: 39580-49579 Arabidopsis thaliana
ATCG00340 10.0kb downstream 10.0kb downstream 12205 true ChrC: 27375-39579 Arabidopsis thaliana
ATCG00340 10.0kb downstream 10.0kb downstream 10000 false ChrC: 27375-37374 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029302 5273 Angiosperm View MSA
122332132 5261 Brassicaceae View MSA
123773240 5264 Brassicales-Malvales View MSA
124271733 5266 SBM View MSA
124127692 5268 Malvidae View MSA
123856513 5270 Rosid View MSA
123736754 5271 Pentapetalae View MSA
122769876 5272 Eudicot View MSA
121350541 5274 Embryophyte View MSA
123381782 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 45.395     High  
cufflinks 1.8        
cufflinks 160.763     High High
cufflinks 1.159       Low
cufflinks 35.356     High  
cufflinks 7.345        

0 Strain