Gene : ATCG00430 A. thaliana TAIR10
Defline:  (1 of 1) K05582 - NAD(P)H-quinone oxidoreductase subunit K (ndhK) Genomic Order:  25
Name:  ? ATCG00430 Secondary Identifier:  ? PAC:19637977
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-3781 Arabidopsis thaliana pathologic  
Athaliana PWY-4302 Arabidopsis thaliana pathologic  
Athaliana PWY-5083 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
ATCG00430 0.5kb upstream 0.5kb upstream 1178 true ChrC: 49257-50434 Arabidopsis thaliana
ATCG00430 0.5kb upstream 0.5kb upstream 500 false ChrC: 49935-50434 Arabidopsis thaliana
ATCG00430 0.5kb downstream 0.5kb downstream 1178 true ChrC: 48757-49934 Arabidopsis thaliana
ATCG00430 0.5kb downstream 0.5kb downstream 500 false ChrC: 48757-49256 Arabidopsis thaliana
ATCG00430 1.0kb upstream 1.0kb upstream 1678 true ChrC: 49257-50934 Arabidopsis thaliana
ATCG00430 1.0kb upstream 1.0kb upstream 1000 false ChrC: 49935-50934 Arabidopsis thaliana
ATCG00430 1.0kb downstream 1.0kb downstream 1678 true ChrC: 48257-49934 Arabidopsis thaliana
ATCG00430 1.0kb downstream 1.0kb downstream 1000 false ChrC: 48257-49256 Arabidopsis thaliana
ATCG00430 2.0kb upstream 2.0kb upstream 2678 true ChrC: 49257-51934 Arabidopsis thaliana
ATCG00430 2.0kb upstream 2.0kb upstream 2000 false ChrC: 49935-51934 Arabidopsis thaliana
ATCG00430 2.0kb downstream 2.0kb downstream 2678 true ChrC: 47257-49934 Arabidopsis thaliana
ATCG00430 2.0kb downstream 2.0kb downstream 2000 false ChrC: 47257-49256 Arabidopsis thaliana
ATCG00430 5.0kb upstream 5.0kb upstream 5678 true ChrC: 49257-54934 Arabidopsis thaliana
ATCG00430 5.0kb upstream 5.0kb upstream 5000 false ChrC: 49935-54934 Arabidopsis thaliana
ATCG00430 5.0kb downstream 5.0kb downstream 5678 true ChrC: 44257-49934 Arabidopsis thaliana
ATCG00430 5.0kb downstream 5.0kb downstream 5000 false ChrC: 44257-49256 Arabidopsis thaliana
ATCG00430 10.0kb upstream 10.0kb upstream 10678 true ChrC: 49257-59934 Arabidopsis thaliana
ATCG00430 10.0kb upstream 10.0kb upstream 10000 false ChrC: 49935-59934 Arabidopsis thaliana
ATCG00430 10.0kb downstream 10.0kb downstream 10678 true ChrC: 39257-49934 Arabidopsis thaliana
ATCG00430 10.0kb downstream 10.0kb downstream 10000 false ChrC: 39257-49256 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375661 5261 Brassicaceae View MSA
123801016 5264 Brassicales-Malvales View MSA
124298363 5266 SBM View MSA
124245241 5268 Malvidae View MSA
124050302 5270 Rosid View MSA
123753609 5271 Pentapetalae View MSA
122797515 5272 Eudicot View MSA
122050391 5273 Angiosperm View MSA
121349421 5274 Embryophyte View MSA
123381301 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.545        
cufflinks 0.311     Low  
cufflinks 10.2       High
cufflinks 0.287     Low Low
cufflinks 3.179        
cufflinks 0.507        

0 Strain