Gene : ATCG00350 A. thaliana TAIR10
Defline:  (1 of 1) K02689 - photosystem I P700 chlorophyll a apoprotein A1 (psaA) Genomic Order:  21
Name:  ? ATCG00350 Secondary Identifier:  ? PAC:19637978
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PHOTOALL-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-101 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
ATCG00350 0.5kb upstream 0.5kb upstream 2753 true ChrC: 39605-42357 Arabidopsis thaliana
ATCG00350 0.5kb upstream 0.5kb upstream 500 false ChrC: 41858-42357 Arabidopsis thaliana
ATCG00350 0.5kb downstream 0.5kb downstream 2753 true ChrC: 39105-41857 Arabidopsis thaliana
ATCG00350 0.5kb downstream 0.5kb downstream 500 false ChrC: 39105-39604 Arabidopsis thaliana
ATCG00350 1.0kb upstream 1.0kb upstream 3253 true ChrC: 39605-42857 Arabidopsis thaliana
ATCG00350 1.0kb upstream 1.0kb upstream 1000 false ChrC: 41858-42857 Arabidopsis thaliana
ATCG00350 1.0kb downstream 1.0kb downstream 3253 true ChrC: 38605-41857 Arabidopsis thaliana
ATCG00350 1.0kb downstream 1.0kb downstream 1000 false ChrC: 38605-39604 Arabidopsis thaliana
ATCG00350 2.0kb upstream 2.0kb upstream 4253 true ChrC: 39605-43857 Arabidopsis thaliana
ATCG00350 2.0kb upstream 2.0kb upstream 2000 false ChrC: 41858-43857 Arabidopsis thaliana
ATCG00350 2.0kb downstream 2.0kb downstream 4253 true ChrC: 37605-41857 Arabidopsis thaliana
ATCG00350 2.0kb downstream 2.0kb downstream 2000 false ChrC: 37605-39604 Arabidopsis thaliana
ATCG00350 5.0kb upstream 5.0kb upstream 7253 true ChrC: 39605-46857 Arabidopsis thaliana
ATCG00350 5.0kb upstream 5.0kb upstream 5000 false ChrC: 41858-46857 Arabidopsis thaliana
ATCG00350 5.0kb downstream 5.0kb downstream 7253 true ChrC: 34605-41857 Arabidopsis thaliana
ATCG00350 5.0kb downstream 5.0kb downstream 5000 false ChrC: 34605-39604 Arabidopsis thaliana
ATCG00350 10.0kb upstream 10.0kb upstream 12253 true ChrC: 39605-51857 Arabidopsis thaliana
ATCG00350 10.0kb upstream 10.0kb upstream 10000 false ChrC: 41858-51857 Arabidopsis thaliana
ATCG00350 10.0kb downstream 10.0kb downstream 12253 true ChrC: 29605-41857 Arabidopsis thaliana
ATCG00350 10.0kb downstream 10.0kb downstream 10000 false ChrC: 29605-39604 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029302 5273 Angiosperm View MSA
122376195 5261 Brassicaceae View MSA
123829253 5264 Brassicales-Malvales View MSA
124321585 5266 SBM View MSA
124245218 5268 Malvidae View MSA
124039340 5270 Rosid View MSA
123753575 5271 Pentapetalae View MSA
122795398 5272 Eudicot View MSA
121350541 5274 Embryophyte View MSA
123381782 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 45.297     High  
cufflinks 1.898       Low
cufflinks 158.624     High High
cufflinks 1.87       Low
cufflinks 32.972     High  
cufflinks 8.281        

0 Strain