Gene : ATCG00380 A. thaliana TAIR10
Defline:  (1 of 3) K02986 - small subunit ribosomal protein S4 (RP-S4, rpsD) Genomic Order:  23
Name:  ? ATCG00380 Secondary Identifier:  ? PAC:19637985
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
ATCG00380 0.5kb upstream 0.5kb upstream 1106 true ChrC: 45223-46328 Arabidopsis thaliana
ATCG00380 0.5kb upstream 0.5kb upstream 500 false ChrC: 45829-46328 Arabidopsis thaliana
ATCG00380 0.5kb downstream 0.5kb downstream 1106 true ChrC: 44723-45828 Arabidopsis thaliana
ATCG00380 0.5kb downstream 0.5kb downstream 500 false ChrC: 44723-45222 Arabidopsis thaliana
ATCG00380 1.0kb upstream 1.0kb upstream 1606 true ChrC: 45223-46828 Arabidopsis thaliana
ATCG00380 1.0kb upstream 1.0kb upstream 1000 false ChrC: 45829-46828 Arabidopsis thaliana
ATCG00380 1.0kb downstream 1.0kb downstream 1606 true ChrC: 44223-45828 Arabidopsis thaliana
ATCG00380 1.0kb downstream 1.0kb downstream 1000 false ChrC: 44223-45222 Arabidopsis thaliana
ATCG00380 2.0kb upstream 2.0kb upstream 2606 true ChrC: 45223-47828 Arabidopsis thaliana
ATCG00380 2.0kb upstream 2.0kb upstream 2000 false ChrC: 45829-47828 Arabidopsis thaliana
ATCG00380 2.0kb downstream 2.0kb downstream 2606 true ChrC: 43223-45828 Arabidopsis thaliana
ATCG00380 2.0kb downstream 2.0kb downstream 2000 false ChrC: 43223-45222 Arabidopsis thaliana
ATCG00380 5.0kb upstream 5.0kb upstream 5606 true ChrC: 45223-50828 Arabidopsis thaliana
ATCG00380 5.0kb upstream 5.0kb upstream 5000 false ChrC: 45829-50828 Arabidopsis thaliana
ATCG00380 5.0kb downstream 5.0kb downstream 5606 true ChrC: 40223-45828 Arabidopsis thaliana
ATCG00380 5.0kb downstream 5.0kb downstream 5000 false ChrC: 40223-45222 Arabidopsis thaliana
ATCG00380 10.0kb upstream 10.0kb upstream 10606 true ChrC: 45223-55828 Arabidopsis thaliana
ATCG00380 10.0kb upstream 10.0kb upstream 10000 false ChrC: 45829-55828 Arabidopsis thaliana
ATCG00380 10.0kb downstream 10.0kb downstream 10606 true ChrC: 35223-45828 Arabidopsis thaliana
ATCG00380 10.0kb downstream 10.0kb downstream 10000 false ChrC: 35223-45222 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028910 5273 Angiosperm View MSA
122377005 5261 Brassicaceae View MSA
123834981 5264 Brassicales-Malvales View MSA
124321984 5266 SBM View MSA
124245243 5268 Malvidae View MSA
124073492 5270 Rosid View MSA
123750002 5271 Pentapetalae View MSA
122790562 5272 Eudicot View MSA
121298338 5274 Embryophyte View MSA
123336315 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.491        
cufflinks 0.803        
cufflinks 11.933       High
cufflinks 0.682       Low
cufflinks 1.899        
cufflinks 3.21        

0 Strain