Gene : ATCG00540 A. thaliana TAIR10
Defline:  (1 of 1) K02634 - apocytochrome f (petA) Genomic Order:  34
Name:  ? ATCG00540 Secondary Identifier:  ? PAC:19638019
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
ATCG00540 0.5kb upstream 0.5kb upstream 1463 true ChrC: 61157-62619 Arabidopsis thaliana
ATCG00540 0.5kb upstream 0.5kb upstream 500 false ChrC: 61157-61656 Arabidopsis thaliana
ATCG00540 0.5kb downstream 0.5kb downstream 1463 true ChrC: 61657-63119 Arabidopsis thaliana
ATCG00540 0.5kb downstream 0.5kb downstream 500 false ChrC: 62620-63119 Arabidopsis thaliana
ATCG00540 1.0kb upstream 1.0kb upstream 1963 true ChrC: 60657-62619 Arabidopsis thaliana
ATCG00540 1.0kb upstream 1.0kb upstream 1000 false ChrC: 60657-61656 Arabidopsis thaliana
ATCG00540 1.0kb downstream 1.0kb downstream 1963 true ChrC: 61657-63619 Arabidopsis thaliana
ATCG00540 1.0kb downstream 1.0kb downstream 1000 false ChrC: 62620-63619 Arabidopsis thaliana
ATCG00540 2.0kb upstream 2.0kb upstream 2963 true ChrC: 59657-62619 Arabidopsis thaliana
ATCG00540 2.0kb upstream 2.0kb upstream 2000 false ChrC: 59657-61656 Arabidopsis thaliana
ATCG00540 2.0kb downstream 2.0kb downstream 2963 true ChrC: 61657-64619 Arabidopsis thaliana
ATCG00540 2.0kb downstream 2.0kb downstream 2000 false ChrC: 62620-64619 Arabidopsis thaliana
ATCG00540 5.0kb upstream 5.0kb upstream 5963 true ChrC: 56657-62619 Arabidopsis thaliana
ATCG00540 5.0kb upstream 5.0kb upstream 5000 false ChrC: 56657-61656 Arabidopsis thaliana
ATCG00540 5.0kb downstream 5.0kb downstream 5963 true ChrC: 61657-67619 Arabidopsis thaliana
ATCG00540 5.0kb downstream 5.0kb downstream 5000 false ChrC: 62620-67619 Arabidopsis thaliana
ATCG00540 10.0kb upstream 10.0kb upstream 10963 true ChrC: 51657-62619 Arabidopsis thaliana
ATCG00540 10.0kb upstream 10.0kb upstream 10000 false ChrC: 51657-61656 Arabidopsis thaliana
ATCG00540 10.0kb downstream 10.0kb downstream 10963 true ChrC: 61657-72619 Arabidopsis thaliana
ATCG00540 10.0kb downstream 10.0kb downstream 10000 false ChrC: 62620-72619 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122332150 5261 Brassicaceae View MSA
123829556 5264 Brassicales-Malvales View MSA
124321607 5266 SBM View MSA
124244904 5268 Malvidae View MSA
124050483 5270 Rosid View MSA
123752202 5271 Pentapetalae View MSA
122795112 5272 Eudicot View MSA
122046539 5273 Angiosperm View MSA
121351197 5274 Embryophyte View MSA
123425549 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.154        
cufflinks 1.416       Low
cufflinks 39.189     High High
cufflinks 1.607       Low
cufflinks 8.393        
cufflinks 6.991        

0 Strain