Gene : ATCG00490 A. thaliana TAIR10
Defline:  (1 of 1) K01601 - ribulose-bisphosphate carboxylase large chain (rbcL) Genomic Order:  29
Name:  ? ATCG00490 Secondary Identifier:  ? PAC:19638008
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana CALVIN-PWY Arabidopsis thaliana pathologic  
Athaliana PHOTOALL-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-5723 Arabidopsis thaliana pathologic  

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
ATCG00490 0.5kb upstream 0.5kb upstream 1940 true ChrC: 54458-56397 Arabidopsis thaliana
ATCG00490 0.5kb upstream 0.5kb upstream 500 false ChrC: 54458-54957 Arabidopsis thaliana
ATCG00490 0.5kb downstream 0.5kb downstream 1940 true ChrC: 54958-56897 Arabidopsis thaliana
ATCG00490 0.5kb downstream 0.5kb downstream 500 false ChrC: 56398-56897 Arabidopsis thaliana
ATCG00490 1.0kb upstream 1.0kb upstream 2440 true ChrC: 53958-56397 Arabidopsis thaliana
ATCG00490 1.0kb upstream 1.0kb upstream 1000 false ChrC: 53958-54957 Arabidopsis thaliana
ATCG00490 1.0kb downstream 1.0kb downstream 2440 true ChrC: 54958-57397 Arabidopsis thaliana
ATCG00490 1.0kb downstream 1.0kb downstream 1000 false ChrC: 56398-57397 Arabidopsis thaliana
ATCG00490 2.0kb upstream 2.0kb upstream 3440 true ChrC: 52958-56397 Arabidopsis thaliana
ATCG00490 2.0kb upstream 2.0kb upstream 2000 false ChrC: 52958-54957 Arabidopsis thaliana
ATCG00490 2.0kb downstream 2.0kb downstream 3440 true ChrC: 54958-58397 Arabidopsis thaliana
ATCG00490 2.0kb downstream 2.0kb downstream 2000 false ChrC: 56398-58397 Arabidopsis thaliana
ATCG00490 5.0kb upstream 5.0kb upstream 6440 true ChrC: 49958-56397 Arabidopsis thaliana
ATCG00490 5.0kb upstream 5.0kb upstream 5000 false ChrC: 49958-54957 Arabidopsis thaliana
ATCG00490 5.0kb downstream 5.0kb downstream 6440 true ChrC: 54958-61397 Arabidopsis thaliana
ATCG00490 5.0kb downstream 5.0kb downstream 5000 false ChrC: 56398-61397 Arabidopsis thaliana
ATCG00490 10.0kb upstream 10.0kb upstream 11440 true ChrC: 44958-56397 Arabidopsis thaliana
ATCG00490 10.0kb upstream 10.0kb upstream 10000 false ChrC: 44958-54957 Arabidopsis thaliana
ATCG00490 10.0kb downstream 10.0kb downstream 11440 true ChrC: 54958-66397 Arabidopsis thaliana
ATCG00490 10.0kb downstream 10.0kb downstream 10000 false ChrC: 56398-66397 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379366 5261 Brassicaceae View MSA
123832933 5264 Brassicales-Malvales View MSA
124321833 5266 SBM View MSA
124244813 5268 Malvidae View MSA
124038153 5270 Rosid View MSA
123753610 5271 Pentapetalae View MSA
122775167 5272 Eudicot View MSA
122051023 5273 Angiosperm View MSA
121312251 5274 Embryophyte View MSA
123428195 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 70.696     High  
cufflinks 1.539       Low
cufflinks 418.135     High High
cufflinks 1.846        
cufflinks 79.723     High  
cufflinks 5.265        

0 Strain