Gene : ATCG00050 A. thaliana TAIR10
Defline:  (1 of 1) PTHR12919:SF22 - 30S RIBOSOMAL PROTEIN S16, CHLOROPLASTIC Genomic Order:  3
Name:  ? ATCG00050 Secondary Identifier:  ? PAC:19637970
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
ATCG00050 0.5kb upstream 0.5kb upstream 1605 true ChrC: 5084-6688 Arabidopsis thaliana
ATCG00050 0.5kb upstream 0.5kb upstream 500 false ChrC: 6189-6688 Arabidopsis thaliana
ATCG00050 0.5kb downstream 0.5kb downstream 1605 true ChrC: 4584-6188 Arabidopsis thaliana
ATCG00050 0.5kb downstream 0.5kb downstream 500 false ChrC: 4584-5083 Arabidopsis thaliana
ATCG00050 1.0kb upstream 1.0kb upstream 2105 true ChrC: 5084-7188 Arabidopsis thaliana
ATCG00050 1.0kb upstream 1.0kb upstream 1000 false ChrC: 6189-7188 Arabidopsis thaliana
ATCG00050 1.0kb downstream 1.0kb downstream 2105 true ChrC: 4084-6188 Arabidopsis thaliana
ATCG00050 1.0kb downstream 1.0kb downstream 1000 false ChrC: 4084-5083 Arabidopsis thaliana
ATCG00050 2.0kb upstream 2.0kb upstream 3105 true ChrC: 5084-8188 Arabidopsis thaliana
ATCG00050 2.0kb upstream 2.0kb upstream 2000 false ChrC: 6189-8188 Arabidopsis thaliana
ATCG00050 2.0kb downstream 2.0kb downstream 3105 true ChrC: 3084-6188 Arabidopsis thaliana
ATCG00050 2.0kb downstream 2.0kb downstream 2000 false ChrC: 3084-5083 Arabidopsis thaliana
ATCG00050 5.0kb upstream 5.0kb upstream 6105 true ChrC: 5084-11188 Arabidopsis thaliana
ATCG00050 5.0kb upstream 5.0kb upstream 5000 false ChrC: 6189-11188 Arabidopsis thaliana
ATCG00050 5.0kb downstream 5.0kb downstream 6105 true ChrC: 84-6188 Arabidopsis thaliana
ATCG00050 5.0kb downstream 5.0kb downstream 5000 false ChrC: 84-5083 Arabidopsis thaliana
ATCG00050 10.0kb upstream 10.0kb upstream 11105 true ChrC: 5084-16188 Arabidopsis thaliana
ATCG00050 10.0kb upstream 10.0kb upstream 10000 false ChrC: 6189-16188 Arabidopsis thaliana
ATCG00050 10.0kb downstream 10.0kb downstream 6188 true ChrC: 1-6188 Arabidopsis thaliana
ATCG00050 10.0kb downstream 10.0kb downstream 5083 false ChrC: 1-5083 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029145 5273 Angiosperm View MSA
122331527 5261 Brassicaceae Singleton cluster - no MSA
123772705 5264 Brassicales-Malvales Singleton cluster - no MSA
124271213 5266 SBM Singleton cluster - no MSA
124127224 5268 Malvidae Singleton cluster - no MSA
124040415 5270 Rosid View MSA
123745165 5271 Pentapetalae View MSA
122796653 5272 Eudicot View MSA
121298528 5274 Embryophyte View MSA
123426601 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.062     Low  
cufflinks 0.014     Low Low
cufflinks 0.221     Low High
cufflinks 0.086     Low  
cufflinks 0.049     Low  
cufflinks 0.073     Low  

0 Strain