Gene : ATCG00065 A. thaliana TAIR10
Defline:  (1 of 5) K02950 - small subunit ribosomal protein S12 (RP-S12, MRPS12, rpsL) Genomic Order:  45
Name:  ? ATCG00065 Secondary Identifier:  ? PAC:19638004
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
ATCG00065 0.5kb upstream 0.5kb upstream 614 true ChrC: 69611-70224 Arabidopsis thaliana
ATCG00065 0.5kb upstream 0.5kb upstream 500 false ChrC: 69725-70224 Arabidopsis thaliana
ATCG00065 0.5kb downstream 0.5kb downstream 614 true ChrC: 69111-69724 Arabidopsis thaliana
ATCG00065 0.5kb downstream 0.5kb downstream 500 false ChrC: 69111-69610 Arabidopsis thaliana
ATCG00065 1.0kb upstream 1.0kb upstream 1114 true ChrC: 69611-70724 Arabidopsis thaliana
ATCG00065 1.0kb upstream 1.0kb upstream 1000 false ChrC: 69725-70724 Arabidopsis thaliana
ATCG00065 1.0kb downstream 1.0kb downstream 1114 true ChrC: 68611-69724 Arabidopsis thaliana
ATCG00065 1.0kb downstream 1.0kb downstream 1000 false ChrC: 68611-69610 Arabidopsis thaliana
ATCG00065 2.0kb upstream 2.0kb upstream 2114 true ChrC: 69611-71724 Arabidopsis thaliana
ATCG00065 2.0kb upstream 2.0kb upstream 2000 false ChrC: 69725-71724 Arabidopsis thaliana
ATCG00065 2.0kb downstream 2.0kb downstream 2114 true ChrC: 67611-69724 Arabidopsis thaliana
ATCG00065 2.0kb downstream 2.0kb downstream 2000 false ChrC: 67611-69610 Arabidopsis thaliana
ATCG00065 5.0kb upstream 5.0kb upstream 5114 true ChrC: 69611-74724 Arabidopsis thaliana
ATCG00065 5.0kb upstream 5.0kb upstream 5000 false ChrC: 69725-74724 Arabidopsis thaliana
ATCG00065 5.0kb downstream 5.0kb downstream 5114 true ChrC: 64611-69724 Arabidopsis thaliana
ATCG00065 5.0kb downstream 5.0kb downstream 5000 false ChrC: 64611-69610 Arabidopsis thaliana
ATCG00065 10.0kb upstream 10.0kb upstream 10114 true ChrC: 69611-79724 Arabidopsis thaliana
ATCG00065 10.0kb upstream 10.0kb upstream 10000 false ChrC: 69725-79724 Arabidopsis thaliana
ATCG00065 10.0kb downstream 10.0kb downstream 10114 true ChrC: 59611-69724 Arabidopsis thaliana
ATCG00065 10.0kb downstream 10.0kb downstream 10000 false ChrC: 59611-69610 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122331602 5261 Brassicaceae View MSA
123772764 5264 Brassicales-Malvales View MSA
124271271 5266 SBM View MSA
124127270 5268 Malvidae View MSA
124063732 5270 Rosid View MSA
123750891 5271 Pentapetalae View MSA
122796702 5272 Eudicot View MSA
122044358 5273 Angiosperm View MSA
123429171 5275 Viridiplantae View MSA
121351184 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.605        
cufflinks 4.261        
cufflinks 24.571       High
cufflinks 5.026        
cufflinks 5.952        
cufflinks 9.978        

0 Strain