Gene : ATCG00020 A. thaliana TAIR10
Defline:  (1 of 1) K02703 - photosystem II P680 reaction center D1 protein (psbA) Genomic Order:  1
Name:  ? ATCG00020 Secondary Identifier:  ? PAC:19637957
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PHOTOALL-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-101 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
ATCG00020 0.5kb upstream 0.5kb upstream 1562 true ChrC: 383-1944 Arabidopsis thaliana
ATCG00020 0.5kb upstream 0.5kb upstream 500 false ChrC: 1445-1944 Arabidopsis thaliana
ATCG00020 0.5kb downstream 0.5kb downstream 1444 true ChrC: 1-1444 Arabidopsis thaliana
ATCG00020 0.5kb downstream 0.5kb downstream 382 false ChrC: 1-382 Arabidopsis thaliana
ATCG00020 1.0kb upstream 1.0kb upstream 2062 true ChrC: 383-2444 Arabidopsis thaliana
ATCG00020 1.0kb upstream 1.0kb upstream 1000 false ChrC: 1445-2444 Arabidopsis thaliana
ATCG00020 1.0kb downstream 1.0kb downstream 1444 true ChrC: 1-1444 Arabidopsis thaliana
ATCG00020 1.0kb downstream 1.0kb downstream 382 false ChrC: 1-382 Arabidopsis thaliana
ATCG00020 2.0kb upstream 2.0kb upstream 3062 true ChrC: 383-3444 Arabidopsis thaliana
ATCG00020 2.0kb upstream 2.0kb upstream 2000 false ChrC: 1445-3444 Arabidopsis thaliana
ATCG00020 2.0kb downstream 2.0kb downstream 1444 true ChrC: 1-1444 Arabidopsis thaliana
ATCG00020 2.0kb downstream 2.0kb downstream 382 false ChrC: 1-382 Arabidopsis thaliana
ATCG00020 5.0kb upstream 5.0kb upstream 6062 true ChrC: 383-6444 Arabidopsis thaliana
ATCG00020 5.0kb upstream 5.0kb upstream 5000 false ChrC: 1445-6444 Arabidopsis thaliana
ATCG00020 5.0kb downstream 5.0kb downstream 1444 true ChrC: 1-1444 Arabidopsis thaliana
ATCG00020 5.0kb downstream 5.0kb downstream 382 false ChrC: 1-382 Arabidopsis thaliana
ATCG00020 10.0kb upstream 10.0kb upstream 11062 true ChrC: 383-11444 Arabidopsis thaliana
ATCG00020 10.0kb upstream 10.0kb upstream 10000 false ChrC: 1445-11444 Arabidopsis thaliana
ATCG00020 10.0kb downstream 10.0kb downstream 1444 true ChrC: 1-1444 Arabidopsis thaliana
ATCG00020 10.0kb downstream 10.0kb downstream 382 false ChrC: 1-382 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379469 5261 Brassicaceae View MSA
123837083 5264 Brassicales-Malvales View MSA
124322240 5266 SBM View MSA
124254176 5268 Malvidae View MSA
124074858 5270 Rosid View MSA
123753555 5271 Pentapetalae View MSA
122797414 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 77.477     High  
cufflinks 1.762       Low
cufflinks 360.69     High High
cufflinks 2.415        
cufflinks 67.286     High  
cufflinks 3.553        

0 Strain