Gene : AT5G66520 A. thaliana TAIR10
Defline:  (1 of 61) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  6195
Name:  ? AT5G66520 Secondary Identifier:  ? PAC:19673164
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G66520 0.5kb upstream 0.5kb upstream 2363 true Chr5: 26551379-26553741 Arabidopsis thaliana
AT5G66520 0.5kb upstream 0.5kb upstream 500 false Chr5: 26551379-26551878 Arabidopsis thaliana
AT5G66520 0.5kb downstream 0.5kb downstream 2363 true Chr5: 26551879-26554241 Arabidopsis thaliana
AT5G66520 0.5kb downstream 0.5kb downstream 500 false Chr5: 26553742-26554241 Arabidopsis thaliana
AT5G66520 1.0kb upstream 1.0kb upstream 2863 true Chr5: 26550879-26553741 Arabidopsis thaliana
AT5G66520 1.0kb upstream 1.0kb upstream 1000 false Chr5: 26550879-26551878 Arabidopsis thaliana
AT5G66520 1.0kb downstream 1.0kb downstream 2863 true Chr5: 26551879-26554741 Arabidopsis thaliana
AT5G66520 1.0kb downstream 1.0kb downstream 1000 false Chr5: 26553742-26554741 Arabidopsis thaliana
AT5G66520 2.0kb upstream 2.0kb upstream 3863 true Chr5: 26549879-26553741 Arabidopsis thaliana
AT5G66520 2.0kb upstream 2.0kb upstream 2000 false Chr5: 26549879-26551878 Arabidopsis thaliana
AT5G66520 2.0kb downstream 2.0kb downstream 3863 true Chr5: 26551879-26555741 Arabidopsis thaliana
AT5G66520 2.0kb downstream 2.0kb downstream 2000 false Chr5: 26553742-26555741 Arabidopsis thaliana
AT5G66520 5.0kb upstream 5.0kb upstream 6863 true Chr5: 26546879-26553741 Arabidopsis thaliana
AT5G66520 5.0kb upstream 5.0kb upstream 5000 false Chr5: 26546879-26551878 Arabidopsis thaliana
AT5G66520 5.0kb downstream 5.0kb downstream 6863 true Chr5: 26551879-26558741 Arabidopsis thaliana
AT5G66520 5.0kb downstream 5.0kb downstream 5000 false Chr5: 26553742-26558741 Arabidopsis thaliana
AT5G66520 10.0kb upstream 10.0kb upstream 11863 true Chr5: 26541879-26553741 Arabidopsis thaliana
AT5G66520 10.0kb upstream 10.0kb upstream 10000 false Chr5: 26541879-26551878 Arabidopsis thaliana
AT5G66520 10.0kb downstream 10.0kb downstream 11863 true Chr5: 26551879-26563741 Arabidopsis thaliana
AT5G66520 10.0kb downstream 10.0kb downstream 10000 false Chr5: 26553742-26563741 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375786 5261 Brassicaceae View MSA
123831277 5264 Brassicales-Malvales View MSA
124344822 5266 SBM View MSA
124252297 5268 Malvidae View MSA
124072628 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.615        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 7.172        
cufflinks 0.017     Low Low
cufflinks 4.795        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain