Gene : SHI A. thaliana TAIR10
Primary Identifier:  ? AT5G66350 Defline:  (1 of 5) PTHR31604//PTHR31604:SF3 - FAMILY NOT NAMED // PROTEIN SHI RELATED SEQUENCE 1-RELATED
Genomic Order:  6178 Name:  ? AT5G66350
Secondary Identifier:  ? PAC:19668607
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G66350 0.5kb upstream 0.5kb upstream 2603 true Chr5: 26504467-26507069 Arabidopsis thaliana
AT5G66350 0.5kb upstream 0.5kb upstream 500 false Chr5: 26506570-26507069 Arabidopsis thaliana
AT5G66350 0.5kb downstream 0.5kb downstream 2603 true Chr5: 26503967-26506569 Arabidopsis thaliana
AT5G66350 0.5kb downstream 0.5kb downstream 500 false Chr5: 26503967-26504466 Arabidopsis thaliana
AT5G66350 1.0kb upstream 1.0kb upstream 3103 true Chr5: 26504467-26507569 Arabidopsis thaliana
AT5G66350 1.0kb upstream 1.0kb upstream 1000 false Chr5: 26506570-26507569 Arabidopsis thaliana
AT5G66350 1.0kb downstream 1.0kb downstream 3103 true Chr5: 26503467-26506569 Arabidopsis thaliana
AT5G66350 1.0kb downstream 1.0kb downstream 1000 false Chr5: 26503467-26504466 Arabidopsis thaliana
AT5G66350 2.0kb upstream 2.0kb upstream 4103 true Chr5: 26504467-26508569 Arabidopsis thaliana
AT5G66350 2.0kb upstream 2.0kb upstream 2000 false Chr5: 26506570-26508569 Arabidopsis thaliana
AT5G66350 2.0kb downstream 2.0kb downstream 4103 true Chr5: 26502467-26506569 Arabidopsis thaliana
AT5G66350 2.0kb downstream 2.0kb downstream 2000 false Chr5: 26502467-26504466 Arabidopsis thaliana
AT5G66350 5.0kb upstream 5.0kb upstream 7103 true Chr5: 26504467-26511569 Arabidopsis thaliana
AT5G66350 5.0kb upstream 5.0kb upstream 5000 false Chr5: 26506570-26511569 Arabidopsis thaliana
AT5G66350 5.0kb downstream 5.0kb downstream 7103 true Chr5: 26499467-26506569 Arabidopsis thaliana
AT5G66350 5.0kb downstream 5.0kb downstream 5000 false Chr5: 26499467-26504466 Arabidopsis thaliana
AT5G66350 10.0kb upstream 10.0kb upstream 12103 true Chr5: 26504467-26516569 Arabidopsis thaliana
AT5G66350 10.0kb upstream 10.0kb upstream 10000 false Chr5: 26506570-26516569 Arabidopsis thaliana
AT5G66350 10.0kb downstream 10.0kb downstream 12103 true Chr5: 26494467-26506569 Arabidopsis thaliana
AT5G66350 10.0kb downstream 10.0kb downstream 10000 false Chr5: 26494467-26504466 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368554 5261 Brassicaceae View MSA
123799600 5264 Brassicales-Malvales View MSA
124297102 5266 SBM View MSA
124149077 5268 Malvidae View MSA
124067577 5270 Rosid View MSA
123749314 5271 Pentapetalae View MSA
122796752 5272 Eudicot View MSA
122049669 5273 Angiosperm View MSA
121344202 5274 Embryophyte View MSA
123379999 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.861        
cufflinks 1.638        
cufflinks 0.349       Low
cufflinks 2.279       High
cufflinks 0.398       Low
cufflinks 1.542        

0 Strain