Gene : AT5G66220 A. thaliana TAIR10
Defline:  (1 of 2) K01859 - chalcone isomerase (E5.5.1.6) Genomic Order:  6166
Name:  ? AT5G66220 Secondary Identifier:  ? PAC:19673039
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY1F-FLAVSYN Arabidopsis thaliana pathologic  
Athaliana PWY-5059 Arabidopsis thaliana pathologic  
Athaliana PWY-6787 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G66220 0.5kb upstream 0.5kb upstream 1498 true Chr5: 26460677-26462174 Arabidopsis thaliana
AT5G66220 0.5kb upstream 0.5kb upstream 500 false Chr5: 26460677-26461176 Arabidopsis thaliana
AT5G66220 0.5kb downstream 0.5kb downstream 1498 true Chr5: 26461177-26462674 Arabidopsis thaliana
AT5G66220 0.5kb downstream 0.5kb downstream 500 false Chr5: 26462175-26462674 Arabidopsis thaliana
AT5G66220 1.0kb upstream 1.0kb upstream 1998 true Chr5: 26460177-26462174 Arabidopsis thaliana
AT5G66220 1.0kb upstream 1.0kb upstream 1000 false Chr5: 26460177-26461176 Arabidopsis thaliana
AT5G66220 1.0kb downstream 1.0kb downstream 1998 true Chr5: 26461177-26463174 Arabidopsis thaliana
AT5G66220 1.0kb downstream 1.0kb downstream 1000 false Chr5: 26462175-26463174 Arabidopsis thaliana
AT5G66220 2.0kb upstream 2.0kb upstream 2998 true Chr5: 26459177-26462174 Arabidopsis thaliana
AT5G66220 2.0kb upstream 2.0kb upstream 2000 false Chr5: 26459177-26461176 Arabidopsis thaliana
AT5G66220 2.0kb downstream 2.0kb downstream 2998 true Chr5: 26461177-26464174 Arabidopsis thaliana
AT5G66220 2.0kb downstream 2.0kb downstream 2000 false Chr5: 26462175-26464174 Arabidopsis thaliana
AT5G66220 5.0kb upstream 5.0kb upstream 5998 true Chr5: 26456177-26462174 Arabidopsis thaliana
AT5G66220 5.0kb upstream 5.0kb upstream 5000 false Chr5: 26456177-26461176 Arabidopsis thaliana
AT5G66220 5.0kb downstream 5.0kb downstream 5998 true Chr5: 26461177-26467174 Arabidopsis thaliana
AT5G66220 5.0kb downstream 5.0kb downstream 5000 false Chr5: 26462175-26467174 Arabidopsis thaliana
AT5G66220 10.0kb upstream 10.0kb upstream 10998 true Chr5: 26451177-26462174 Arabidopsis thaliana
AT5G66220 10.0kb upstream 10.0kb upstream 10000 false Chr5: 26451177-26461176 Arabidopsis thaliana
AT5G66220 10.0kb downstream 10.0kb downstream 10998 true Chr5: 26461177-26472174 Arabidopsis thaliana
AT5G66220 10.0kb downstream 10.0kb downstream 10000 false Chr5: 26462175-26472174 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121781374 5273 Angiosperm View MSA
122331494 5261 Brassicaceae Singleton cluster - no MSA
123772678 5264 Brassicales-Malvales Singleton cluster - no MSA
124271186 5266 SBM Singleton cluster - no MSA
124127201 5268 Malvidae Singleton cluster - no MSA
124051952 5270 Rosid View MSA
123749457 5271 Pentapetalae View MSA
122773155 5272 Eudicot View MSA
121052951 5274 Embryophyte View MSA
123092981 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain