Gene : ATMG00160 A. thaliana TAIR10
Defline:  (1 of 1) K02261 - cytochrome c oxidase subunit 2 (COX2) Genomic Order:  14
Name:  ? ATMG00160 Secondary Identifier:  ? PAC:19643626
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Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-3781 Arabidopsis thaliana pathologic  
Athaliana PWY-7279 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
ATMG00160 0.5kb upstream 0.5kb upstream 2627 true ChrM: 40502-43128 Arabidopsis thaliana
ATMG00160 0.5kb upstream 0.5kb upstream 500 false ChrM: 42629-43128 Arabidopsis thaliana
ATMG00160 0.5kb downstream 0.5kb downstream 2627 true ChrM: 40002-42628 Arabidopsis thaliana
ATMG00160 0.5kb downstream 0.5kb downstream 500 false ChrM: 40002-40501 Arabidopsis thaliana
ATMG00160 1.0kb upstream 1.0kb upstream 3127 true ChrM: 40502-43628 Arabidopsis thaliana
ATMG00160 1.0kb upstream 1.0kb upstream 1000 false ChrM: 42629-43628 Arabidopsis thaliana
ATMG00160 1.0kb downstream 1.0kb downstream 3127 true ChrM: 39502-42628 Arabidopsis thaliana
ATMG00160 1.0kb downstream 1.0kb downstream 1000 false ChrM: 39502-40501 Arabidopsis thaliana
ATMG00160 2.0kb upstream 2.0kb upstream 4127 true ChrM: 40502-44628 Arabidopsis thaliana
ATMG00160 2.0kb upstream 2.0kb upstream 2000 false ChrM: 42629-44628 Arabidopsis thaliana
ATMG00160 2.0kb downstream 2.0kb downstream 4127 true ChrM: 38502-42628 Arabidopsis thaliana
ATMG00160 2.0kb downstream 2.0kb downstream 2000 false ChrM: 38502-40501 Arabidopsis thaliana
ATMG00160 5.0kb upstream 5.0kb upstream 7127 true ChrM: 40502-47628 Arabidopsis thaliana
ATMG00160 5.0kb upstream 5.0kb upstream 5000 false ChrM: 42629-47628 Arabidopsis thaliana
ATMG00160 5.0kb downstream 5.0kb downstream 7127 true ChrM: 35502-42628 Arabidopsis thaliana
ATMG00160 5.0kb downstream 5.0kb downstream 5000 false ChrM: 35502-40501 Arabidopsis thaliana
ATMG00160 10.0kb upstream 10.0kb upstream 12127 true ChrM: 40502-52628 Arabidopsis thaliana
ATMG00160 10.0kb upstream 10.0kb upstream 10000 false ChrM: 42629-52628 Arabidopsis thaliana
ATMG00160 10.0kb downstream 10.0kb downstream 12127 true ChrM: 30502-42628 Arabidopsis thaliana
ATMG00160 10.0kb downstream 10.0kb downstream 10000 false ChrM: 30502-40501 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027311 5273 Angiosperm View MSA
122379224 5261 Brassicaceae View MSA
123802149 5264 Brassicales-Malvales View MSA
124299366 5266 SBM View MSA
124252079 5268 Malvidae View MSA
124070743 5270 Rosid View MSA
123743967 5271 Pentapetalae View MSA
122795698 5272 Eudicot View MSA
121348321 5274 Embryophyte View MSA
123428300 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.549       Low
cufflinks 1.078        
cufflinks 1.48        
cufflinks 1.035        
cufflinks 0.689        
cufflinks 2.262       High

0 Strain