Gene : ATMG00080 A. thaliana TAIR10
Defline:  (1 of 1) PTHR12220//PTHR12220:SF15 - 50S/60S RIBOSOMAL PROTEIN L16 // 60S RIBOSOMAL PROTEIN L16, MITOCHONDRIAL Genomic Order:  7
Name:  ? ATMG00080 Secondary Identifier:  ? PAC:19643688
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
ATMG00080 0.5kb upstream 0.5kb upstream 1040 true ChrM: 25076-26115 Arabidopsis thaliana
ATMG00080 0.5kb upstream 0.5kb upstream 500 false ChrM: 25616-26115 Arabidopsis thaliana
ATMG00080 0.5kb downstream 0.5kb downstream 1040 true ChrM: 24576-25615 Arabidopsis thaliana
ATMG00080 0.5kb downstream 0.5kb downstream 500 false ChrM: 24576-25075 Arabidopsis thaliana
ATMG00080 1.0kb upstream 1.0kb upstream 1540 true ChrM: 25076-26615 Arabidopsis thaliana
ATMG00080 1.0kb upstream 1.0kb upstream 1000 false ChrM: 25616-26615 Arabidopsis thaliana
ATMG00080 1.0kb downstream 1.0kb downstream 1540 true ChrM: 24076-25615 Arabidopsis thaliana
ATMG00080 1.0kb downstream 1.0kb downstream 1000 false ChrM: 24076-25075 Arabidopsis thaliana
ATMG00080 2.0kb upstream 2.0kb upstream 2540 true ChrM: 25076-27615 Arabidopsis thaliana
ATMG00080 2.0kb upstream 2.0kb upstream 2000 false ChrM: 25616-27615 Arabidopsis thaliana
ATMG00080 2.0kb downstream 2.0kb downstream 2540 true ChrM: 23076-25615 Arabidopsis thaliana
ATMG00080 2.0kb downstream 2.0kb downstream 2000 false ChrM: 23076-25075 Arabidopsis thaliana
ATMG00080 5.0kb upstream 5.0kb upstream 5540 true ChrM: 25076-30615 Arabidopsis thaliana
ATMG00080 5.0kb upstream 5.0kb upstream 5000 false ChrM: 25616-30615 Arabidopsis thaliana
ATMG00080 5.0kb downstream 5.0kb downstream 5540 true ChrM: 20076-25615 Arabidopsis thaliana
ATMG00080 5.0kb downstream 5.0kb downstream 5000 false ChrM: 20076-25075 Arabidopsis thaliana
ATMG00080 10.0kb upstream 10.0kb upstream 10540 true ChrM: 25076-35615 Arabidopsis thaliana
ATMG00080 10.0kb upstream 10.0kb upstream 10000 false ChrM: 25616-35615 Arabidopsis thaliana
ATMG00080 10.0kb downstream 10.0kb downstream 10540 true ChrM: 15076-25615 Arabidopsis thaliana
ATMG00080 10.0kb downstream 10.0kb downstream 10000 false ChrM: 15076-25075 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379316 5261 Brassicaceae View MSA
123802205 5264 Brassicales-Malvales View MSA
124299419 5266 SBM View MSA
124248022 5268 Malvidae View MSA
123952219 5270 Rosid View MSA
123746840 5271 Pentapetalae View MSA
122794950 5272 Eudicot View MSA
122041743 5273 Angiosperm View MSA
123429161 5275 Viridiplantae View MSA
121350825 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.573        
cufflinks 5.33        
cufflinks 5.622        
cufflinks 4.349        
cufflinks 1.291       Low
cufflinks 15.514       High

0 Strain