Gene : AT3G08820 A. thaliana TAIR10
Defline:  (1 of 61) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  832
Name:  ? AT3G08820 Secondary Identifier:  ? PAC:19659826
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G08820 0.5kb upstream 0.5kb upstream 2562 true Chr3: 2677118-2679679 Arabidopsis thaliana
AT3G08820 0.5kb upstream 0.5kb upstream 500 false Chr3: 2679180-2679679 Arabidopsis thaliana
AT3G08820 0.5kb downstream 0.5kb downstream 2562 true Chr3: 2676618-2679179 Arabidopsis thaliana
AT3G08820 0.5kb downstream 0.5kb downstream 500 false Chr3: 2676618-2677117 Arabidopsis thaliana
AT3G08820 1.0kb upstream 1.0kb upstream 3062 true Chr3: 2677118-2680179 Arabidopsis thaliana
AT3G08820 1.0kb upstream 1.0kb upstream 1000 false Chr3: 2679180-2680179 Arabidopsis thaliana
AT3G08820 1.0kb downstream 1.0kb downstream 3062 true Chr3: 2676118-2679179 Arabidopsis thaliana
AT3G08820 1.0kb downstream 1.0kb downstream 1000 false Chr3: 2676118-2677117 Arabidopsis thaliana
AT3G08820 2.0kb upstream 2.0kb upstream 4062 true Chr3: 2677118-2681179 Arabidopsis thaliana
AT3G08820 2.0kb upstream 2.0kb upstream 2000 false Chr3: 2679180-2681179 Arabidopsis thaliana
AT3G08820 2.0kb downstream 2.0kb downstream 4062 true Chr3: 2675118-2679179 Arabidopsis thaliana
AT3G08820 2.0kb downstream 2.0kb downstream 2000 false Chr3: 2675118-2677117 Arabidopsis thaliana
AT3G08820 5.0kb upstream 5.0kb upstream 7062 true Chr3: 2677118-2684179 Arabidopsis thaliana
AT3G08820 5.0kb upstream 5.0kb upstream 5000 false Chr3: 2679180-2684179 Arabidopsis thaliana
AT3G08820 5.0kb downstream 5.0kb downstream 7062 true Chr3: 2672118-2679179 Arabidopsis thaliana
AT3G08820 5.0kb downstream 5.0kb downstream 5000 false Chr3: 2672118-2677117 Arabidopsis thaliana
AT3G08820 10.0kb upstream 10.0kb upstream 12062 true Chr3: 2677118-2689179 Arabidopsis thaliana
AT3G08820 10.0kb upstream 10.0kb upstream 10000 false Chr3: 2679180-2689179 Arabidopsis thaliana
AT3G08820 10.0kb downstream 10.0kb downstream 12062 true Chr3: 2667118-2679179 Arabidopsis thaliana
AT3G08820 10.0kb downstream 10.0kb downstream 10000 false Chr3: 2667118-2677117 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361721 5261 Brassicaceae View MSA
123828942 5264 Brassicales-Malvales View MSA
124338657 5266 SBM View MSA
124243845 5268 Malvidae View MSA
124072628 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.531       High
cufflinks 1.083        
cufflinks 0.702        
cufflinks 1.008        
cufflinks 0.605       Low
cufflinks 1.482       High

0 Strain