Gene : QRT2 A. thaliana TAIR10
Primary Identifier:  ? AT3G07970 Defline:  (1 of 1) PTHR31375//PTHR31375:SF28 - FAMILY NOT NAMED // POLYGALACTURONASE QRT2
Genomic Order:  789 Name:  ? AT3G07970
Secondary Identifier:  ? PAC:19658560
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-1081 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G07970 0.5kb upstream 0.5kb upstream 2927 true Chr3: 2540506-2543432 Arabidopsis thaliana
AT3G07970 0.5kb upstream 0.5kb upstream 500 false Chr3: 2540506-2541005 Arabidopsis thaliana
AT3G07970 0.5kb downstream 0.5kb downstream 2927 true Chr3: 2541006-2543932 Arabidopsis thaliana
AT3G07970 0.5kb downstream 0.5kb downstream 500 false Chr3: 2543433-2543932 Arabidopsis thaliana
AT3G07970 1.0kb upstream 1.0kb upstream 3427 true Chr3: 2540006-2543432 Arabidopsis thaliana
AT3G07970 1.0kb upstream 1.0kb upstream 1000 false Chr3: 2540006-2541005 Arabidopsis thaliana
AT3G07970 1.0kb downstream 1.0kb downstream 3427 true Chr3: 2541006-2544432 Arabidopsis thaliana
AT3G07970 1.0kb downstream 1.0kb downstream 1000 false Chr3: 2543433-2544432 Arabidopsis thaliana
AT3G07970 2.0kb upstream 2.0kb upstream 4427 true Chr3: 2539006-2543432 Arabidopsis thaliana
AT3G07970 2.0kb upstream 2.0kb upstream 2000 false Chr3: 2539006-2541005 Arabidopsis thaliana
AT3G07970 2.0kb downstream 2.0kb downstream 4427 true Chr3: 2541006-2545432 Arabidopsis thaliana
AT3G07970 2.0kb downstream 2.0kb downstream 2000 false Chr3: 2543433-2545432 Arabidopsis thaliana
AT3G07970 5.0kb upstream 5.0kb upstream 7427 true Chr3: 2536006-2543432 Arabidopsis thaliana
AT3G07970 5.0kb upstream 5.0kb upstream 5000 false Chr3: 2536006-2541005 Arabidopsis thaliana
AT3G07970 5.0kb downstream 5.0kb downstream 7427 true Chr3: 2541006-2548432 Arabidopsis thaliana
AT3G07970 5.0kb downstream 5.0kb downstream 5000 false Chr3: 2543433-2548432 Arabidopsis thaliana
AT3G07970 10.0kb upstream 10.0kb upstream 12427 true Chr3: 2531006-2543432 Arabidopsis thaliana
AT3G07970 10.0kb upstream 10.0kb upstream 10000 false Chr3: 2531006-2541005 Arabidopsis thaliana
AT3G07970 10.0kb downstream 10.0kb downstream 12427 true Chr3: 2541006-2553432 Arabidopsis thaliana
AT3G07970 10.0kb downstream 10.0kb downstream 10000 false Chr3: 2543433-2553432 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369807 5261 Brassicaceae View MSA
123839826 5264 Brassicales-Malvales View MSA
124338536 5266 SBM View MSA
124237828 5268 Malvidae View MSA
124073768 5270 Rosid View MSA
123750458 5271 Pentapetalae View MSA
122794874 5272 Eudicot View MSA
122047278 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.048     Low  
cufflinks 10.391        
cufflinks 0.031     Low Low
cufflinks 7.081        
cufflinks 0.138     Low  
cufflinks 11.651        

0 Strain