Gene : NS2 A. thaliana TAIR10
Primary Identifier:  ? AT3G07420 Defline:  (1 of 1) PTHR22594//PTHR22594:SF36 - ASPARTYL/LYSYL-TRNA SYNTHETASE // ASPARAGINE--TRNA LIGASE, CYTOPLASMIC 2
Genomic Order:  729 Name:  ? AT3G07420
Secondary Identifier:  ? PAC:19662031
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana TRNA-CHARGING-PWY Arabidopsis thaliana pathologic  

Genomics

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Expression

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G07420 0.5kb upstream 0.5kb upstream 3268 true Chr3: 2373977-2377244 Arabidopsis thaliana
AT3G07420 0.5kb upstream 0.5kb upstream 500 false Chr3: 2376745-2377244 Arabidopsis thaliana
AT3G07420 0.5kb downstream 0.5kb downstream 3268 true Chr3: 2373477-2376744 Arabidopsis thaliana
AT3G07420 0.5kb downstream 0.5kb downstream 500 false Chr3: 2373477-2373976 Arabidopsis thaliana
AT3G07420 1.0kb upstream 1.0kb upstream 3768 true Chr3: 2373977-2377744 Arabidopsis thaliana
AT3G07420 1.0kb upstream 1.0kb upstream 1000 false Chr3: 2376745-2377744 Arabidopsis thaliana
AT3G07420 1.0kb downstream 1.0kb downstream 3768 true Chr3: 2372977-2376744 Arabidopsis thaliana
AT3G07420 1.0kb downstream 1.0kb downstream 1000 false Chr3: 2372977-2373976 Arabidopsis thaliana
AT3G07420 2.0kb upstream 2.0kb upstream 4768 true Chr3: 2373977-2378744 Arabidopsis thaliana
AT3G07420 2.0kb upstream 2.0kb upstream 2000 false Chr3: 2376745-2378744 Arabidopsis thaliana
AT3G07420 2.0kb downstream 2.0kb downstream 4768 true Chr3: 2371977-2376744 Arabidopsis thaliana
AT3G07420 2.0kb downstream 2.0kb downstream 2000 false Chr3: 2371977-2373976 Arabidopsis thaliana
AT3G07420 5.0kb upstream 5.0kb upstream 7768 true Chr3: 2373977-2381744 Arabidopsis thaliana
AT3G07420 5.0kb upstream 5.0kb upstream 5000 false Chr3: 2376745-2381744 Arabidopsis thaliana
AT3G07420 5.0kb downstream 5.0kb downstream 7768 true Chr3: 2368977-2376744 Arabidopsis thaliana
AT3G07420 5.0kb downstream 5.0kb downstream 5000 false Chr3: 2368977-2373976 Arabidopsis thaliana
AT3G07420 10.0kb upstream 10.0kb upstream 12768 true Chr3: 2373977-2386744 Arabidopsis thaliana
AT3G07420 10.0kb upstream 10.0kb upstream 10000 false Chr3: 2376745-2386744 Arabidopsis thaliana
AT3G07420 10.0kb downstream 10.0kb downstream 12768 true Chr3: 2363977-2376744 Arabidopsis thaliana
AT3G07420 10.0kb downstream 10.0kb downstream 10000 false Chr3: 2363977-2373976 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371956 5261 Brassicaceae View MSA
123830836 5264 Brassicales-Malvales View MSA
124344086 5266 SBM View MSA
124250826 5268 Malvidae View MSA
124074798 5270 Rosid View MSA
123738885 5271 Pentapetalae View MSA
122790023 5272 Eudicot View MSA
122045893 5273 Angiosperm View MSA
121347200 5274 Embryophyte View MSA
123425101 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.344        
cufflinks 18.624        
cufflinks 2.475        
cufflinks 16.251        
cufflinks 1.886       Low
cufflinks 18.433        

0 Strain