Gene : AT3G07195 A. thaliana TAIR10
Defline:  (1 of 11) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  707
Name:  ? AT3G07195 Secondary Identifier:  ? PAC:19663315
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G07195 0.5kb upstream 0.5kb upstream 2114 true Chr3: 2288392-2290505 Arabidopsis thaliana
AT3G07195 0.5kb upstream 0.5kb upstream 500 false Chr3: 2288392-2288891 Arabidopsis thaliana
AT3G07195 0.5kb downstream 0.5kb downstream 2114 true Chr3: 2288892-2291005 Arabidopsis thaliana
AT3G07195 0.5kb downstream 0.5kb downstream 500 false Chr3: 2290506-2291005 Arabidopsis thaliana
AT3G07195 1.0kb upstream 1.0kb upstream 2614 true Chr3: 2287892-2290505 Arabidopsis thaliana
AT3G07195 1.0kb upstream 1.0kb upstream 1000 false Chr3: 2287892-2288891 Arabidopsis thaliana
AT3G07195 1.0kb downstream 1.0kb downstream 2614 true Chr3: 2288892-2291505 Arabidopsis thaliana
AT3G07195 1.0kb downstream 1.0kb downstream 1000 false Chr3: 2290506-2291505 Arabidopsis thaliana
AT3G07195 2.0kb upstream 2.0kb upstream 3614 true Chr3: 2286892-2290505 Arabidopsis thaliana
AT3G07195 2.0kb upstream 2.0kb upstream 2000 false Chr3: 2286892-2288891 Arabidopsis thaliana
AT3G07195 2.0kb downstream 2.0kb downstream 3614 true Chr3: 2288892-2292505 Arabidopsis thaliana
AT3G07195 2.0kb downstream 2.0kb downstream 2000 false Chr3: 2290506-2292505 Arabidopsis thaliana
AT3G07195 5.0kb upstream 5.0kb upstream 6614 true Chr3: 2283892-2290505 Arabidopsis thaliana
AT3G07195 5.0kb upstream 5.0kb upstream 5000 false Chr3: 2283892-2288891 Arabidopsis thaliana
AT3G07195 5.0kb downstream 5.0kb downstream 6614 true Chr3: 2288892-2295505 Arabidopsis thaliana
AT3G07195 5.0kb downstream 5.0kb downstream 5000 false Chr3: 2290506-2295505 Arabidopsis thaliana
AT3G07195 10.0kb upstream 10.0kb upstream 11614 true Chr3: 2278892-2290505 Arabidopsis thaliana
AT3G07195 10.0kb upstream 10.0kb upstream 10000 false Chr3: 2278892-2288891 Arabidopsis thaliana
AT3G07195 10.0kb downstream 10.0kb downstream 11614 true Chr3: 2288892-2300505 Arabidopsis thaliana
AT3G07195 10.0kb downstream 10.0kb downstream 10000 false Chr3: 2290506-2300505 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360414 5261 Brassicaceae View MSA
123797948 5264 Brassicales-Malvales View MSA
124295645 5266 SBM View MSA
124148023 5268 Malvidae View MSA
123874109 5270 Rosid View MSA
123746059 5271 Pentapetalae View MSA
122771759 5272 Eudicot View MSA
122048165 5273 Angiosperm View MSA
121344169 5274 Embryophyte View MSA
123379991 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.108       High
cufflinks 7.781        
cufflinks 2.806       Low
cufflinks 4.949        
cufflinks 3.17        
cufflinks 5.254        

0 Strain