Gene : CHR11 A. thaliana TAIR10
Primary Identifier:  ? AT3G06400 Defline:  (1 of 2) K11654 - SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:3.6.4.-] (SMARCA5, SNF2H, ISWI)
Genomic Order:  616 Name:  ? AT3G06400
Secondary Identifier:  ? PAC:19658940
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G06400 0.5kb upstream 0.5kb upstream 6452 true Chr3: 1940473-1946924 Arabidopsis thaliana
AT3G06400 0.5kb upstream 0.5kb upstream 500 false Chr3: 1940473-1940972 Arabidopsis thaliana
AT3G06400 0.5kb downstream 0.5kb downstream 6452 true Chr3: 1940973-1947424 Arabidopsis thaliana
AT3G06400 0.5kb downstream 0.5kb downstream 500 false Chr3: 1946925-1947424 Arabidopsis thaliana
AT3G06400 1.0kb upstream 1.0kb upstream 6952 true Chr3: 1939973-1946924 Arabidopsis thaliana
AT3G06400 1.0kb upstream 1.0kb upstream 1000 false Chr3: 1939973-1940972 Arabidopsis thaliana
AT3G06400 1.0kb downstream 1.0kb downstream 6952 true Chr3: 1940973-1947924 Arabidopsis thaliana
AT3G06400 1.0kb downstream 1.0kb downstream 1000 false Chr3: 1946925-1947924 Arabidopsis thaliana
AT3G06400 2.0kb upstream 2.0kb upstream 7952 true Chr3: 1938973-1946924 Arabidopsis thaliana
AT3G06400 2.0kb upstream 2.0kb upstream 2000 false Chr3: 1938973-1940972 Arabidopsis thaliana
AT3G06400 2.0kb downstream 2.0kb downstream 7952 true Chr3: 1940973-1948924 Arabidopsis thaliana
AT3G06400 2.0kb downstream 2.0kb downstream 2000 false Chr3: 1946925-1948924 Arabidopsis thaliana
AT3G06400 5.0kb upstream 5.0kb upstream 10952 true Chr3: 1935973-1946924 Arabidopsis thaliana
AT3G06400 5.0kb upstream 5.0kb upstream 5000 false Chr3: 1935973-1940972 Arabidopsis thaliana
AT3G06400 5.0kb downstream 5.0kb downstream 10952 true Chr3: 1940973-1951924 Arabidopsis thaliana
AT3G06400 5.0kb downstream 5.0kb downstream 5000 false Chr3: 1946925-1951924 Arabidopsis thaliana
AT3G06400 10.0kb upstream 10.0kb upstream 15952 true Chr3: 1930973-1946924 Arabidopsis thaliana
AT3G06400 10.0kb upstream 10.0kb upstream 10000 false Chr3: 1930973-1940972 Arabidopsis thaliana
AT3G06400 10.0kb downstream 10.0kb downstream 15952 true Chr3: 1940973-1956924 Arabidopsis thaliana
AT3G06400 10.0kb downstream 10.0kb downstream 10000 false Chr3: 1946925-1956924 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377062 5261 Brassicaceae View MSA
123835817 5264 Brassicales-Malvales View MSA
124338350 5266 SBM View MSA
124242697 5268 Malvidae View MSA
124061699 5270 Rosid View MSA
123742661 5271 Pentapetalae View MSA
122785954 5272 Eudicot View MSA
122043891 5273 Angiosperm View MSA
121345373 5274 Embryophyte View MSA
123428510 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.44        
cufflinks 9.717        
cufflinks 5.583       Low
cufflinks 9.976       High
cufflinks 6.025        
cufflinks 9.166        

0 Strain